G84109


Basic Information

Item Value
gene id G84109
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28060017 ~ 28114357 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113301
CCAGACAGGTCTCACCAAtaagaaatgaaaatattgtcatgtggTTTGTTGTGAGGCAAATCAAGGGGAaagtacacttttttttgtaaacatgcttttatttatacaatGCATGCAATGCAATGTTCTCTTTCAAGTGTGAGCAGATAAAGGTGGAACCTTGTAAGTACTGCCCTTAAATCTACTGTGGCACAAACTcagtgtagaaaataatttaaagagtAAACTTTAAACTGAATTCTGCATAGCTtaaattacaaattaacaaGGCACTTATGCTACGTTCGAAATGTTTCAGAAACTGTGAAATACCATTTAGTACCATTTGATGTTACATACTGCCCTTCTCTACAAGTTCATAAACTCAGTTTATATCAACTTTTGCATTACTACACTCTGTTGACAATGCAGTGTCTTTCTTGGGATATTCTACATACCTCCATGcttaagtgggcggagctttcgACAAGCACCCGCACAGACTAAAGCTGTATTTACTAGTTAACCATCTGGTCAATACAACCTTTTGAGGAGCACTTTAATGCAACATTAATCCTAATAAACATGGTATTGTGGCAGTTCTTACAATCTACAGGTTACTGATTATTTAGCACTGAATGTATATAATTATCAAACTGAGTATACAAACACAGCttgaaaatgttaaatgttttgtgtgcatccattaaaaaaaaaataataaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113301 True 711 lncRNA 0.34 2 28060017 28114357

Neighbor

gene id symbol gene type direction distance location
unc79 NA coding downstream 62896 27928554 ~ 27997121 (-)
fam181a fam181a coding downstream 162077 27894955 ~ 27897940 (-)
LOC103043263 NA coding downstream 179702 27875148 ~ 27880315 (-)
otub2 otub2,ddx24 coding downstream 186311 27865545 ~ 27873706 (-)
LOC111193234 NA coding downstream 424610 27632645 ~ 27635407 (-)
zc2hc1c NA coding upstream 216 28114573 ~ 28119005 (-)
erg28 cunh14orf1,gb:ev754742,c9h14orf1,LOC103034519,LOC107724257,LOC107554785,LOC103358042 coding upstream 63424 28177781 ~ 28180984 (-)
tgfb3 tgfb3,LOC106590795 coding upstream 153680 28268037 ~ 28293987 (-)
prox2 prox2 coding upstream 528692 28643049 ~ 28659946 (-)
LOC111193143 LOC108423410 coding upstream 583873 28698230 ~ 28701669 (-)
G84083 NA non-coding downstream 54295 27998584 ~ 28005722 (-)
G84064 LOC103042318,LOC108423523 non-coding downstream 200857 27856275 ~ 27859160 (-)
G84063 NA non-coding downstream 204633 27853356 ~ 27855384 (-)
G84045 NA non-coding downstream 240153 27815850 ~ 27819864 (-)
G83973 NA non-coding downstream 355129 27704226 ~ 27704888 (-)
G84197 NA non-coding upstream 151813 28266170 ~ 28267487 (-)
G84229 NA non-coding upstream 306627 28420984 ~ 28424692 (-)
G84263 NA non-coding upstream 454114 28568471 ~ 28568719 (-)
G84265 NA non-coding upstream 473023 28587380 ~ 28588098 (-)
G84332 NA non-coding upstream 628238 28742595 ~ 28743620 (-)
LOC103043566 LOC108423527,LOC108270165,LOC100330554,LOC107677688,LOC103153288,LOC103458816,LOC106945627,LOC103355980,LOC102293757 other downstream 211573 27830628 ~ 27848444 (-)
cga cga other downstream 1589854 26434472 ~ 26470163 (-)
G83612 NA other downstream 2056332 25992499 ~ 26003685 (-)
LOC103040243 tdh,LOC103040243,LOC108441731,LOC107561940,LOC107723287,LOC107589050,LOC107701506,LOC107746115,LOC105018021,LOC104922441 other downstream 3018963 25034004 ~ 25041054 (-)
LOC103026430 LOC108428707,LOC108269919,LOC107102228,LOC103379330,LOC101162185 other downstream 3424136 24630879 ~ 24635881 (-)
G84215 NA other upstream 230232 28344589 ~ 28356545 (-)
rps6kl1 rps6kl1 other upstream 561241 28675598 ~ 28694982 (-)
G84392 NA other upstream 961119 29075476 ~ 29076115 (-)
G84579 nol10 other upstream 1694172 29808529 ~ 29810277 (-)
hpcal1 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378,LOC106607246 other upstream 1744620 29858977 ~ 29930575 (-)

Expression


Co-expression Network