G84164


Basic Information

Item Value
gene id G84164
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28301733 ~ 28360989 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113373
ATATTGTGCCATATCTATAGAAGCTAAAAAGCACTGTATGTGGGGTCTCTCGCATTGAAcgtgaatgtgatttctgccagagtcgctTCACAGTTTGTTCACACGGAtcattctagccagatgccaccagtcatgatcattaccatttacagtaagcactttctactgtgggtggtaaggCCTTCTGTGAGGGTTTCCTTTTTACACACGTAACACTGTGGATCAAAGAATACTAAATGCCTGAGCAACTTAATAAAATGTTCCATCcacctggcacccactatcaggcctctcTTGAACTGAAAATTCACTCCAGCTTATCATGAggatgctggccagtgttcaccCTCACTCACGATATCACCTCACAAGGTTTTGTACAGGCATAGGTGTTCCCAAGACATTTTGTGAAGTAACACttaatgatcaatttacatacttatGTCCTTTTGCCATGTTAGTGTATAAATGTGCAGCTCATTTACTAATGAAATGTGTCGGTAACCAATACAAAAACTTTGTTAGAATTTTTGGCTAAACTAAATTAAGTTAACTCAAAAGGCATAAAATGAAAACTCACTGCTAACCAGGCTCTTAACTTCCCATCTTATTAGGACTTAGAAGACTTTCCTTGCTCTGGGTTCAAGATGTGGACATCCCTTACAGAAAGCTAGGCAGCTCTctgttctttcattttaaacaaagtAAAGAAATTCCTGAAAAGCTCTACATCATTTACAGACCCAATTTGGTCATGTAAAATATTGTGCATTTTTTAGACAATTTATTGCCTGCCATCCTTCCCTTCCACCAGCGTTCCGTCATTCAGAAGTtggtcttctattttttttctttttgacgtACTTCATCCAGTCCAATTGACTGTTTCCAGGGCTATTTTCAGAAACTAagaatgagaatgagagagcAAAAGGCTATTTTCTTTCCTGGAGCTATTTTGGGTCATGAGGGGCAGCCCTGTAGGCCTCTGTGCAGTTCCCACAGTCTGCTGTTCTTCATGTTCTTCATCCTCAAACATTCTCCCCGAACTACCAGACAGGTCTGCTGTCACTGAAACCCACCAGACACACATGAAGAGCTGCTAATTATGTCAGAGAGTGTGAGTCATGCAACCCTGCACTAATTAGGTGAGTTTAGGAAACCTAATTACACAGTGTAGCTCTTTGAGATCAGTGGCTGAATaggaagaaataaagaaaaaagttcacATCAGTcaaaaaacatggtaaagtTACAGTATTAGTACTAttgcatcttaaaaaatttaatatcattgaaaagttactttatttcagtgattcagttcaaaatgtaaaactcatattatatagatgtattaaacacagagtgatctattttaagcatttgtttattttattgttgatgattatggcttacagtcaatgaaaactcaaaaatcaacagatgacatgactctccaaaccatcactgattgtggaaacttcactctagacctcaagcaaCTTGGACTGTCTCTTCACTctttctccagactctggtcccttgatttacaaatgaaatgcaaaatttactgatggtcagtgatgtattggagagccatgtcatctgctggtgttgatccactgtgttatatcaagtccaaagtcattgcagtgttttccacgaaaatcttacagcgcttcatgcttccctctgctgacaacttttatagagatgtagatttaattttccagccggacttggcacactgtcaaAACTAcaagttggtcttatataatatataatacacacacacaatttctcattgtttttcttgggtgtgtgtgtgtgtgtgtgtttacacactAATGAACATCAATATTTTAGCCAGGTGCAGAGTGAACTGTTGCATATGAAGAAAAATGTACACATCATCtaaactattattaattaaaagtgtATatgtttaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113373 True 1954 lncRNA 0.38 2 28301733 28360989

Neighbor

gene id symbol gene type direction distance location
ttll5 NA coding upstream 36406 28182427 ~ 28265327 (+)
flvcr2 flvcr2,LOC106525280,LOC106571030,LOC108242486,LOC104964435 coding upstream 124029 28152935 ~ 28177704 (+)
jdp2 jdp2,jdp2a,LOC107701522,LOC107589793,LOC107702236 coding upstream 151624 28134313 ~ 28150109 (+)
LOC103036705 fos,LOC108423428,LOC107702235 coding upstream 170843 28127393 ~ 28130890 (+)
acyp1 acyp1 coding upstream 180026 28119021 ~ 28121707 (+)
gpatch2l gpatch2l coding downstream 14548 28375537 ~ 28417805 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding downstream 67957 28428946 ~ 28560094 (+)
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding downstream 301103 28662092 ~ 28675663 (+)
LOC103029222 NA coding downstream 378252 28739241 ~ 28748428 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding downstream 414160 28775149 ~ 28801239 (+)
G84001 NA non-coding upstream 378375 27923069 ~ 27923358 (+)
LOC111193235 LOC103459065 non-coding upstream 455767 27831977 ~ 27845966 (+)
G83972 NA non-coding upstream 596852 27704254 ~ 27704881 (+)
LOC107197843 NA non-coding upstream 686166 27604237 ~ 27615567 (+)
G83826 NA non-coding upstream 1032502 27268958 ~ 27269231 (+)
G84219 NA non-coding downstream 12959 28373948 ~ 28374517 (+)
G84264 NA non-coding downstream 226407 28587396 ~ 28587954 (+)
G84280 NA non-coding downstream 344904 28705893 ~ 28723051 (+)
G84291 fcf1,LOC107704360 non-coding downstream 409179 28770168 ~ 28772835 (+)
G84294 NA non-coding downstream 442125 28803114 ~ 28803321 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 470149 27824256 ~ 27831584 (+)
fam98b NA other upstream 479522 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1524245 26727823 ~ 26777488 (+)
spata7 NA other upstream 1902466 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 1974395 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 609275 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 638513 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 679990 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 682228 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 710902 29071891 ~ 29078898 (+)

Expression


Co-expression Network