G84219


Basic Information

Item Value
gene id G84219
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28373948 ~ 28374517 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113440
cttgtgtcacgtctggtgctgttagctcctctgtcccttccacacccagctctaacggaggttctcaggttaacaactacactacccagaatgcaccacccgctgacatcacgcactcacctgatcacgtgacacctcacctgcttccaccaggaagccccgaatactgattactggcactataaaggtgcacgccaaacagacttcatcgccgcgtattgtaggttatcctcgtacaaagcgttacttatctcttgtctcagttactttgtgtatgaccttgcttttgtttactcgacgccgattcttgcctctgcctttgatattggattgtttgtgtatgacctggactgtgctttcactactgcctcttggattacctctgatactggattgcttgtgtatgaactctggactgtctctcgtttatggtatggttttgtcttcattgctctgtctactggtgatcacccttatttttgtatcgaccctgatttcatctgtttattatcataataaacacattttgtttttatcagtatctgcgcttgtctgctattctgttctgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113440 True 570 lncRNA 0.45 1 28373948 28374517

Neighbor

gene id symbol gene type direction distance location
LOC111193237 NA coding upstream 17139 28355574 ~ 28356809 (+)
ift43 ift43,LOC107688076 coding upstream 53456 28297960 ~ 28320492 (+)
ttll5 NA coding upstream 108621 28182427 ~ 28265327 (+)
flvcr2 flvcr2,LOC106525280,LOC106571030,LOC108242486,LOC104964435 coding upstream 196244 28152935 ~ 28177704 (+)
jdp2 jdp2,jdp2a,LOC107701522,LOC107589793,LOC107702236 coding upstream 223839 28134313 ~ 28150109 (+)
gpatch2l gpatch2l coding downstream 1020 28375537 ~ 28417805 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding downstream 54429 28428946 ~ 28560094 (+)
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding downstream 287575 28662092 ~ 28675663 (+)
LOC103029222 NA coding downstream 364724 28739241 ~ 28748428 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding downstream 400632 28775149 ~ 28801239 (+)
G84164 NA non-coding upstream 12959 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding upstream 42540 28328775 ~ 28331408 (+)
G84001 NA non-coding upstream 450590 27923069 ~ 27923358 (+)
LOC111193235 LOC103459065 non-coding upstream 527982 27831977 ~ 27845966 (+)
G83972 NA non-coding upstream 669067 27704254 ~ 27704881 (+)
G84264 NA non-coding downstream 212879 28587396 ~ 28587954 (+)
G84280 NA non-coding downstream 331376 28705893 ~ 28723051 (+)
G84291 fcf1,LOC107704360 non-coding downstream 395651 28770168 ~ 28772835 (+)
G84294 NA non-coding downstream 428597 28803114 ~ 28803321 (+)
G84296 NA non-coding downstream 449307 28823824 ~ 28825276 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 542364 27824256 ~ 27831584 (+)
fam98b NA other upstream 551737 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1596460 26727823 ~ 26777488 (+)
spata7 NA other upstream 1974681 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 2046610 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 595747 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 624985 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 666462 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 668700 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 697374 29071891 ~ 29078898 (+)

Expression


Co-expression Network