G84280


Basic Information

Item Value
gene id G84280
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28705893 ~ 28723051 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113516
TCAGATGAACTGCTCATATACTTTTATTAACAGGACTGAAATGTGACAGAAAgcatttagtgtttagtgttccTCAGCAAAACACATCCACAAAAACATTCCACACACAATTTCAGCTGTGATCATTTTTAGATCAGGACCTGTGGTTTATTTGATTGGTTCTGGTTGAACCAAACATGATAACTGACATAATAACCATTGTTGTACATGTAAAGCTTCTGATCAGTGGGGTTGTAATCCAGGTATGTGTATCTCTCCTGAAACTTCTCAAAGGGAATGCTGACATAAAGTCCCTTTTGGGTGTGAGTGTCATAGGTGTAGAAGATCTCCTCTGTCTTGGTGTCTACAGATCGCGTAGTATAAAGAACACCACAAACCATGAAGGCATTGCCCACAGATGGCTTGTAAACGCTGGTCTGCCAAACCTGCTTTAGAGCAAACGCTGCCTCATCTATCTTACCCAGCACTAGTTTACCCTTCGATGCCTCTGTAGCATACATTACCCATAATCCACTCTCATCCGCTGCAAAATCTAAGTTCTGATTGTCAGAATAATGGTAGGAAAATCTGCTGCTTGCACCCGACACAGCCCTGTACTCAGCTGTCTGACTGGTTATATTGAACTTGGCCATGCTGAAAGGGCTGGCGTACTGATAGTAGAAGGTGTTCGCACGTATGATGTAGTTATTGCCAGTCCCTTGCCAGTTCTTTGGAGATAAGAGGTCATATGTTTTCATCGCCTGTCTCATGATCAGTTTGTAGTAGTCTGAATAGACACTCATATATCTCACCACTGTAGTGGTGGCAGCAGAGTACCAGTACCTATTTTCAGTACCAGGCAGTGGGTGTGAATCTTTGCCCCAGCCTCCGTAAATGTGACCTGTTCCCAGGTTTGCATTCAGCTGGCTAATGATTGGTTTGCTTAGTCTTGAAATACCACCATGGTTGCAAGATCctataaaaaagacaaattacaAAAGTTATAAATAAG
>TU113518
TGCAATGCTTGAATTCagttttattaatgagtttaaaAGACATGcatcttttatttgattgtttaaTATTGACATAATCAAACAAGTAAATGCTTTGTGCTCACgtctttaaacacacttttctgAAACACACCAGTCTGCCAGAGATACTCTAGGCAGTCTTGAACTTTACATTGTATGAGACGTAGTAGCCATTGTTGTACATGTAAAGCTTCTGATCTGTGGGGTTGTAGTCCAGGCTCACATAGGAATCCTGGAACTTCTCAAAAGGAAGGCTGACATAGTTCTCCTGTCTGGTCTGAGTGTCGTAAGCGTAGAAGATCTCCTCTGTCTTGGTGTCTACAGATCTCGTAGCATAAAGAACACCACATATCATGAAGGCATTGGTCACAGACTGTTTAAAGATACTGGTTTCCCAAACCTCTGACAGTGCAAACGCTGCCTCATCTATCTTCCCCAGCACCAGTTTACCCTTCGATGCCTCTGTAGCATACGTCACCCATAATCCACTCTCATCAGCTGCGAAATCTAAGTTCTGATTGGCATGATAATGGTAAGAAAATCTGCTGCTTGCACCCGACACAGCCCTGTACTCAGCTGTCTGACTGGTTATATTGAACTTGGCCATGCTGAAAGGGCTGGCGTATTGATAGTAGAAGGTGTTCGCACGTATGATGTAGTTATTGCCAGTCCCTTGCCAGTTCTTTGGAGATAAGAGGTCATATGTTTTCATCGCCTGTCTCATGATCAGTTTGTAGTAGTCTGAATAGACACTCATATATCTCACCACTGTAGTGGTGGCAGCAGAGTACCAGTACCTATTTTCAGTACCAGGCAGTGGGTGTGAATCTTTGCCCCAGCCTCCGTAAATGTGACCTGTTCCCAGGTTTGCATTCAGCTGGCTAATGATTGGTTTGCTTAGTCTTGAAATACCACCATGGTTGCAAGATCctataaaaaagacaaattacaAAAGTTATAAATAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113516 True 991 lncRNA 0.42 2 28705893 28723051
TU113518 False 987 lncRNA 0.42 2 28716080 28723051

Neighbor

gene id symbol gene type direction distance location
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding upstream 30230 28662092 ~ 28675663 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding upstream 145799 28428946 ~ 28560094 (+)
gpatch2l gpatch2l coding upstream 288088 28375537 ~ 28417805 (+)
LOC111193237 NA coding upstream 349084 28355574 ~ 28356809 (+)
ift43 ift43,LOC107688076 coding upstream 385401 28297960 ~ 28320492 (+)
LOC103029222 NA coding downstream 16190 28739241 ~ 28748428 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding downstream 52098 28775149 ~ 28801239 (+)
LOC111193134 ltbp2 coding downstream 131232 28854283 ~ 28969028 (+)
adi1 adi1,LOC107753353 coding downstream 464524 29187575 ~ 29215673 (+)
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding downstream 542002 29265053 ~ 29324443 (+)
G84264 NA non-coding upstream 117939 28587396 ~ 28587954 (+)
G84219 NA non-coding upstream 331376 28373948 ~ 28374517 (+)
G84164 NA non-coding upstream 344904 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding upstream 374485 28328775 ~ 28331408 (+)
G84001 NA non-coding upstream 782535 27923069 ~ 27923358 (+)
G84291 fcf1,LOC107704360 non-coding downstream 47117 28770168 ~ 28772835 (+)
G84294 NA non-coding downstream 80063 28803114 ~ 28803321 (+)
G84296 NA non-coding downstream 100773 28823824 ~ 28825276 (+)
G84298 NA non-coding downstream 202559 28925610 ~ 28926176 (+)
G84300 NA non-coding downstream 256422 28979473 ~ 28979778 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 874309 27824256 ~ 27831584 (+)
fam98b NA other upstream 883682 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1928405 26727823 ~ 26777488 (+)
spata7 NA other upstream 2306626 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 2378555 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 247213 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 276451 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 317928 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 320166 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 348840 29071891 ~ 29078898 (+)

Expression


Co-expression Network