G84291 (fcf1,LOC107704360)


Basic Information

Item Value
gene id G84291
gene name fcf1,LOC107704360
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28770168 ~ 28772835 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113538
taacagATCAGTcgttacatttattttcctttaaacaaatacattttgtttaaaataattaaacaaaataagaaaaaaataaacctgcaggaaaatgtgcaaaaaatgtTGACAGGTTTGTGGTCTGATATACAATTCTCCgatttattttaagaatcaaGAGGATGACATCTTTAATATATTACAGCCTTGGTGCACCATAATCATCTGGCATTCGTTCAATGTTATACCTGTGATTCGAGATGTACATGATTGGGACTCCTGGAATTTTCCGAATCCTCCTCTTCAGgtctctgtccactgtggcCACAATGTAACACTTGTGCTGGGTTACCCTTTGGACTAAACAGTCATCAGCATATGTTCCCTTGTGTGAGCATGGCAAGCGATCAAAGCGAGGATCCTTGGCTATTCTCAAGGCCACTCTGTATTTCATCCCTAATTTTTCAAGCTCAGCCATGACACAGTCTGTGATGCAGGGAATACATTTAGCATAAAGACAGTCCATCATCGACTGCACTACATCCAGTTTGGCCTTTATGGAGAAGTTGATGAAGTTTGTGTCCACAAGGATATGGTAGGGAGGACCAAGTTGAGTGTTGTACTGGAAGAACATACATGATGGATATTTTGGCacttcTTGTATTTGGATGGCTGAGGGATctgctttcttctttttctgggTTTTTTCTCTATCCTTCTCCTttAATCTTTGATCCTTTAAACTTATCATTCTTTTCATTGCTGCatatttctgcttcttctgcttcccCTATTAATCAATGGCACATATTTGTACAATGAGTATTACAGCGGAGCATCACAATGATTTTGAAAcaggtttaaaatgattcattgttgctttttacttttaaaaaaaagctcattAAAACTGAGGTAATCCAAACTACGGATGGAACAAATAAGGAGCCATGTAGTGAACTTAAATGTGAAAAACCAAAAACATTTAGAAGCATTTAGTTGGGCTCTTATCTGggtggtaactctgatgaacttatcctgtgcaacagaggtaactcttgctcttctgtTCCTTGGACAGTTTTGATGAAAGACAGTTTCATTGCAAAAATGTTTGACGGGCTTTGCGTCtccacttgaggatacttttttaGTTCTTggatctttttagttatttttttagttcacttagttgagtagttctagTCATAACATGCATTAGAATGTTACTCAAATAGATATATGCTTAATTTCATTGAACACCTTTTGAGTTTTGTGCAGTGACAATAAAGGATTCCTTTATTACAATAAAGATTcctttattttatgataaattaatCTTTGTCACTATCCATATTTGCCTTGTGAATTTAATGCCTAAGGTCTTCTCCAATGCATCCCCACTATAAACacagcaacatttttttttttactttttaagtgtACAAAACAGTAACAGAACTGCTTTACAAGTTGGTACAAGCTGTACAACACGACAGCTGGCACTTTAGCTCGAG

Function

symbol description
fcf1 Predicted to act upstream of or within rRNA processing. Predicted to be part of small-subunit processome. Orthologous to human FCF1 (FCF1 rRNA-processing protein).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113538 True 1499 lncRNA 0.36 7 28770168 28772835

Neighbor

gene id symbol gene type direction distance location
LOC103029222 NA coding upstream 21740 28739241 ~ 28748428 (+)
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding upstream 94505 28662092 ~ 28675663 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding upstream 210074 28428946 ~ 28560094 (+)
gpatch2l gpatch2l coding upstream 352363 28375537 ~ 28417805 (+)
LOC111193237 NA coding upstream 413359 28355574 ~ 28356809 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding downstream 2314 28775149 ~ 28801239 (+)
LOC111193134 ltbp2 coding downstream 81448 28854283 ~ 28969028 (+)
adi1 adi1,LOC107753353 coding downstream 414740 29187575 ~ 29215673 (+)
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding downstream 492218 29265053 ~ 29324443 (+)
LOC103038403 myt1l coding downstream 641677 29414512 ~ 29625594 (+)
G84280 NA non-coding upstream 47117 28705893 ~ 28723051 (+)
G84264 NA non-coding upstream 182214 28587396 ~ 28587954 (+)
G84219 NA non-coding upstream 395651 28373948 ~ 28374517 (+)
G84164 NA non-coding upstream 409179 28301733 ~ 28360989 (+)
LOC111193142 NA non-coding upstream 438760 28328775 ~ 28331408 (+)
G84294 NA non-coding downstream 30279 28803114 ~ 28803321 (+)
G84296 NA non-coding downstream 50989 28823824 ~ 28825276 (+)
G84298 NA non-coding downstream 152775 28925610 ~ 28926176 (+)
G84300 NA non-coding downstream 206638 28979473 ~ 28979778 (+)
G84307 NA non-coding downstream 239756 29012591 ~ 29018336 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 938584 27824256 ~ 27831584 (+)
fam98b NA other upstream 947957 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1992680 26727823 ~ 26777488 (+)
spata7 NA other upstream 2370901 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 2442830 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 197429 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 226667 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 268144 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 270382 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 299056 29071891 ~ 29078898 (+)

Expression


Co-expression Network