G84311


Basic Information

Item Value
gene id G84311
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29046743 ~ 29071659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113571
AGATACTGTAACCTCTCTTCTCTTTGATCATCACTGGAGGAGGATGTAGGTGGGGTTCTTCTTAtgtcacacacactttttttgggtggtaagacacacacacacacacacacacacacacacacctgcctgATTTCTCAGTACTCACCGAAATAGCAACATTCAGTTTAGATTAAGTGCTGCTAAACACCTGACTAAATTACAAAATAGTGTGCGGAGAGAACGATGAGAAACGGAGATAAAGCGCGGTGGGGGGAGGACGGGTGAGAGGCAGAATGagcacttttgtttttgtataatGCTTTAGCACCGTGGGGACAGGGGGGGCACGGTGATACACTTCCATAGAGCCGCCGTACAAAAACCTCCTGCCGTTTACTGTCAGTGACGGCGTGCCAGAGAAGCGGGATATGAACTCAATTTCACCTTATAACTTCATTTTATAAGTTAGAATGTCATTAAGTGTTAATGACAatcatattttcttattttttctttattttttgattaattTACACATTTCATTATTGGGTAAATTGCTGATCCTTGTACCTCACCAATGGATTATGCACTGATTAACAAAATTAACATCTATTTTGTAATGAAACCTCAGAGCATGATCTGCATCCAAGTCATTTATAAtggaattactttttttttttttttttttttttttttgaagaagcaCAACTTCCAATATCCAATATCTATGGTGCTTAATGGAATACTATGAGGACCTGAGGCCTATTTCGACGCACTGATTAACAATGTGACACTGGAACTCAAGCTTACTTTGGAGCAGGAACCAAACTAACTGTTTTAGATCCAGACCCTAATAAAATCACTAAACCCAAGGAACTGAAAGtcaagttactgaatcattcatcaGAGGAAGAGTGTACGGAGAAACGGGTCACTCTGGTCTGCCTGGCTGAAGAATTTTTACCCTGACCACATCGATCTGGCCTGGTATATAGATGATAAAGAAGAATCCACAGGAGTTGCAAAAGATGATTCTGCTAAACTAAATACTGACAATACATACAGCATCTCCAGCAGACTGAGCATCCCCTTTAAAAAGTGGAATCAAGGCAATACATACACATGCGCTTAAGCTCACCTTCTACTACCCAAACAAGACCAGCGATGGCACATATAAAGCTGATCCTGTGACAAAACTGGAATCTTTAACAGCACCAAAACgGGACAACCCTTCAGACAAAGCAGataaATACACCAGACAGGGAAGAACCACAATGGTGGCCTATGGTTTGTTCATTGCCTAAAAGTGTCCTGTACGGCCTTTTCGTCATCGTGATCGTGAGACGACAGCGTTTCGTTTCGAAGTAAAGGAGTTCGGACTGGAGTGATCCGGAGTGATCCAGGACAGAAGAGGACCCAGTGTTAGCATCACGTTAACACAAACCTTGTGTATAAAGGCCTGCTTATTATATactgcttgttttttattacattatactaATGTTATTTGTCAGCAGCTTTATGTCCAAATATACTTGTACACTTTTAAAACTGAAGATgctttaggagttcagaaaagCTCAGCAGGATCGTAAGTCTGGGTTTGAGAGAggaaaattggccttgctttctctctagGTGGGTATAAGGTGTTCTCTCCTCCAATCACACCAGGGGTCCTATCGTAAACCCTGCACAAGGACCATCACGATAGCTatactgatgggcgtggtggtctggaagtgaggtgtgttcaggtaaatttctggtgtgttgatGTTTTTTAAGGAATAAAATTACATAGTTGTTCCCATAATTTAGCTGCTGGCATATCTTCACAGCATTAACGTGCAGCTCAGTATCCTCTGTATCCTCGCACAGGTTTGTCTTAAAGGGAACGGCAagtgaaacactgattggttaatttcacgatacgcccaaaacacacccatgattaattaagagaattagttcatgccttttgcacatttctaaGTGctcaaggcatatttttttgcactctcacgataccaaagacacaccgacacgccttAAATCCAGCTACATAATCCACAGTTGactggtgcactatagatcgctaaaatagggccctatggGTTTGATGTTGGCTGGCACAGTCATCTATTAGCTAATGTATTGGAGCTGGGGATCCAGCGCTTTCCTCTGTGTTGGTTGGCTACTTAGTGATACTGCCCtggcagcagttcaaaaaaaggGGTGGAGGCtttaacttcacatgtatcggaggaggcatgagcTTTTCATGACCCTTTTAGTGTCTGGAGCATTGTAAGTGGGTGAGTAATAAGTAATTGGCTTTAGCAAATTGGAGAAAAAATTGGCTAAATAAAAGTTCAtgaaaaattgataaaaaaaagtggttCTTGAAATATTTCTATTAGGAaccatgttttaaataaaaatgtctgtGAAGCATTTGTGAGTCTAAAGAAAAGAATCCTTATGTGatataaaggttttattttattttacttttaacaaaTTTAAAGATTCTTCACATTCAAATCTTGATATTGGTTGATATTGAAAGcaacttcattttttaaagtgtacgCCTTGTTTGTTGTATAATGTTAACATAGATATTAATACATGTTACtgtctgtaaaaacaaaaaaaaaaaaatctaaacttctGCAACCAGTAGTTACTGGCTTATGTTCCCCACTGGCATAACTTGGGAACAATTCAACAACAGCCAGTTTGCATTGCTTTTTGCACGTGTACAGTTAGCAATCTGTTAATACGTTTTAATATAAGTCATAGGGCAAAAGGGGTTGATGAGGGGTTAatgtatcaaatcaaatcatttaTCATACAAAAAATGCTAGATTTAAAATGTCAACATtggaaa
>TU113572
GTTTGCTTTAAGTAACAAACTGTAATAAAGGATtgcaaatacaatattttattctctctctttctataggGGACAACCCTTCAGACAAAGCAGataaATACACCAGACAGGGAAGAACCACAATGGTGGCCTATGGTTTGTTCATTGCCTAAAAGTGTCCTGTACGGCCTTTTCGTCATCGTGATCGTGAGACGACAGCGTTTCGTTTCGAAGTAAAGGAGTTCGGACTGGAGTGATCCGGAGTGATCCAGGACAGAAGAGGACCCAGTGTTAGCATCACGTTAACACAAACCTTGTGTATAAAGGCCTGCTTATTATATactgcttgttttttattacattatactaATGTTATTTGTCAGCAGCTTTATGTCCAAATATACTTGTACACTTTTAAAACTGAAGATgctttaggagttcagaaaagCTCAGCAGGATCGTAAGTCTGGGTTTGAGAGAggaaaattggccttgctttctctctagGTGGGTATAAGGTGTTCTCTCCTCCAATCACACCAGGGGTCCTATCGTAAACCCTGCACAAGGACCATCACGATAGCTatactgatgggcgtggtggtctggaagtgaggtgtgttcaggtaaatttctggtgtgttgatGTTTTTTAAGGAATAAAATTACATAGTTGTTCCCATAATTTAGCTGCTGGCATATCTTCACAGCATTAACGTGCAGCTCAGTATCCTCTGTATCCTCGCACAGGTTTGTCTTAAAGGGAACGGCAagtgaaacactgattggttaatttcacgatacgcccaaaacacacccatgattaattaagagaattagttcatgccttttgcacatttctaaGTGctcaaggcatatttttttgcactctcacgataccaaagacacaccgacacgccttAAATCCAGCTACATAATCCACAGTTGactggtgcactatagatcgctaaaatagggccctatggGTTTGATGTTGGCTGGCACAGTCATCTATTAGCTAATGTATTGGAGCTGGGGATCCAGCGCTTTCCTCTGTGTTGGTTGGCTACTTAGTGATACTGCCCtggcagcagttcaaaaaaaggGGTGGAGGCtttaacttcacatgtatcggaggaggcatgagcTTTTCATGACCCTTTTAGTGTCTGGAGCATTGTAAGTGGGTGAGTAATAAGTAATTGGCTTTAGCAAATTGGAGAAAAAATTGGCTAAATAAAAGTTCAtgaaaaattgataaaaaaaagtggttCTTGAAATATTTCTATTAGGAaccatgttttaaataaaaatgtctgtGAAGCATTTGTGAGTCTAAAGAAAAGAATCCTTATGTGatataaaggttttattttattttacttttaacaaaTTTAAAGATTCTTCACATTCAAATCTTGATATTGGTTGATATTGAAAGcaacttcattttttaaagtgtacgCCTTGTTTGTTGTATAATGTTAACATAGATATTAATACATGTTACtgtctgtaaaaacaaaaaaaaaaaaatctaaacttctGCAACCAGTAGTTACTGGCTTATGTTCCCCACTGGCATAACTTGGGAACAATTCAACAACAGCCAGTTTGCATTGCTTTTTGCACGTGTACAGTTAGCAATCTGTTAATACGTTTTAATATAAGTCATAGGGCAAAAGGGGTTGATGAGGGGTTAatgtatcaaatcaaatcatttaTCATACAAAAAATGCTAGATTTAAAATGTCAACATtggaaa
>TU113575
AGATACTGTAACCTCTCTTCTCTTTGATCATCACTGGAGGAGGATGTAGGTGGGGTTCTTCTTAtgtcacacacactttttttgggtggtaagacacacacacacacacacacacacacacacacctgcctgATTTCTCAGTACTCACCGAAATAGCAACATTCAGTTTAGATTAAGTGCTGCTAAACACCTGACTAAATTACAAAATAGTGTGCGGAGAGAACGATGAGAAACGGAGATAAAGCGCGGTGGGGGGAGGACGGaagcaCAACTTCCAATATCCAATATCTATGGTGCTTAATGGAATACTATGAGGACCTGAGGCCTATTTCGACGCACTGATTAACAATGTGACACTGGAACTCAAGCTTACTTTGGAGCAGGAACCAAACTAACTGTTTTAGATCCAGACCCTAATAAAATCACTAAACCCAAGGAACTGAAAGtcaagttactgaatcattcatcaGAGGAAGAGTGTACGGAGAAACGGGTCACTCTGGTCTGCCTGGCTGAAGAATTTTTACCCTGACCACATCGATCTGGCCTGGTATATAGATGATAAAGAAGAATCCACAGGAGTTGCAAAAGATGATTCTGCTAAACTAAATACTGACAATACATACAGCATCTCCAGCAGACTGAGCATCCCCTTTAAAAAGTGGAATCAAGGCAATACATACACATGCGCTTAAGCTCACCTTCTACTACCCAAACAAGACCAGCGATGGCACATATAAAGCTGATCCTGTGACAAAACTGGAATCTTTAACAGCACCAAAACgGGACAACCCTTCAGACAAAGCAGataaATACACCAGACAGGGAAGAACCACAATGGTGGCCTATGGTTTGTTCATTGCCTAAAAGTGTCCTGTACGGCCTTTTCGTCATCGTGATCGTGAGACGACAGCGTTTCGTTTCGAAGTAAAGGAGTTCGGACTGGAGTGATCCGGAGTGATCCAGGACAGAAGAGGACCCAGTGTTAGCATCACGTTAACACAAACCTTGTGTATAAAGGCCTGCTTATTATATactgcttgttttttattacattatactaATGTTATTTGTCAGCAGCTTTATGTCCAAATATACTTGTACACTTTTAAAACTGAAGATgctttaggagttcagaaaagCTCAGCAGGATCGTAAGTCTGGGTTTGAGAGAggaaaattggccttgctttctctctagGTGGGTATAAGGTGTTCTCTCCTCCAATCACACCAGGGGTCCTATCGTAAACCCTGCACAAGGACCATCACGATAGCTatactgatgggcgtggtggtctggaagtgaggtgtgttcaggtaaatttctggtgtgttgatGTTTTTTAAGGAATAAAATTACATAGTTGTTCCCATAATTTAGCTGCTGGCATATCTTCACAGCATTAACGTGCAGCTCAGTATCCTCTGTATCCTCGCACAGGTTTGTCTTAAAGGGAACGGCAagtgaaacactgattggttaatttcacgatacgcccaaaacacacccatgattaattaagagaattagttcatgccttttgcacatttctaaGTGctcaaggcatatttttttgcactctcacgataccaaagacacaccgacacgccttAAATCCAGCTACATAATCCACAGTTGactggtgcactatagatcgctaaaatagggccctatggGTTTGATGTTGGCTGGCACAGTCATCTATTAGCTAATGTATTGGAGCTGGGGATCCAGCGCTTTCCTCTGTGTTGGTTGGCTACTTAGTGATACTGCCCtggcagcagttcaaaaaaaggGGTGGAGGCtttaacttcacatgtatcggaggaggcatgagcTTTTCATGACCCTTTTAGTGTCTGGAGCATTGTAAGTGGGTGAGTAATAAGTAATTGGCTTTAGCAAATTGGAGAAAAAATTGGCTAAATAAAAGTTCAtgaaaaattgataaaaaaaagtggttCTTGAAATATTTCTATTAGGAaccatgttttaaataaaaatgtctgtGAAGCATTTGTGAGTCTAAAGAAAAGAATCCTTATGTGatataaaggttttattttattttacttttaacaaaTTTAAAGATTCTTCACATTCAAATCTTGATATTGGTTGATATTGAAAGcaacttcattttttaaagtgtacgCCTTGTTTGTTGTATAATGTTAACATAGATATTAATACATGTTACtgtctgtaaaaacaaaaaaaaaaaaatctaaacttctGCAACCAGTAGTTACTGGCTTATGTTCCCCACTGGCATAACTTGGGAACAATTCAACAACAGCCAGTTTGCATTGCTTTTTGCACGTGTACAGTTAGCAATCTGTTAATACGTTTTAATATAAGTCATAGGGCAAAAGGGGTTGATGAGGGGTTAatgtatcaaatcaaatcatttaTCATACAAAAAATGCTAGATTTAAAATGTCAACATtggaaa

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0030098 lymphocyte differentiation biological_process
GO:0002520 immune system development biological_process
GO:0002521 leukocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0001775 cell activation biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:0030217 T cell differentiation biological_process
GO:0002376 immune system process biological_process
GO:0046649 lymphocyte activation biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU113571 True 2878 lncRNA 0.39 5 29046743 29071659
TU113572 False 1744 lncRNA 0.38 3 29066923 29071659
TU113575 False 2459 lncRNA 0.40 6 29046743 29071659

Neighbor

gene id symbol gene type direction distance location
LOC111193134 ltbp2 coding upstream 77715 28854283 ~ 28969028 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding upstream 245504 28775149 ~ 28801239 (+)
LOC103029222 NA coding upstream 298315 28739241 ~ 28748428 (+)
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding upstream 371080 28662092 ~ 28675663 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding upstream 486649 28428946 ~ 28560094 (+)
adi1 adi1,LOC107753353 coding downstream 115916 29187575 ~ 29215673 (+)
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding downstream 193394 29265053 ~ 29324443 (+)
LOC103038403 myt1l coding downstream 342853 29414512 ~ 29625594 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding downstream 554976 29626635 ~ 29716871 (+)
LOC103028385 LOC103028385 coding downstream 662954 29734613 ~ 29737276 (+)
G84313 NA non-coding upstream 18920 29027288 ~ 29027823 (+)
G84307 NA non-coding upstream 28407 29012591 ~ 29018336 (+)
G84308 NA non-coding upstream 31286 29015017 ~ 29015457 (+)
G84300 NA non-coding upstream 66965 28979473 ~ 28979778 (+)
G84298 NA non-coding upstream 120567 28925610 ~ 28926176 (+)
G84402 NA non-coding downstream 32072 29103731 ~ 29103978 (+)
G84403 NA non-coding downstream 38953 29110612 ~ 29112649 (+)
G84412 LOC107589761 non-coding downstream 88735 29160394 ~ 29162367 (+)
G84414 LOC108269999,LOC108423477,LOC107570253,LOC107684238,LOC107753355 non-coding downstream 101147 29172806 ~ 29175987 (+)
G84415 LOC108423477,LOC108269999,LOC107723284,LOC107589779 non-coding downstream 108210 29179869 ~ 29185938 (+)
LOC111193135 NA other upstream 3004 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 5136 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 21629 28999502 ~ 29025114 (+)
LOC107197841 NA other upstream 75904 28970264 ~ 28970839 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 1215159 27824256 ~ 27831584 (+)
LOC107197844 NA other downstream 232 29071891 ~ 29078898 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other downstream 895891 29967550 ~ 30015180 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 1535098 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 2383325 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 2678044 31749703 ~ 31805403 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G161836 NA non-coding NC_047604.1 CM018550.1 8815689 ~ 9044936 (+)