G84415 (LOC108423477,LOC108269999,LOC107723284,LOC107589779)


Basic Information

Item Value
gene id G84415
gene name LOC108423477,LOC108269999,LOC107723284,LOC107589779
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29179869 ~ 29185938 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113704
tttttttttgtaaaaattaaatatttttttgggccatatcgcccagctatACTCACAGCTGCTGTCCGTCCTTTTGCGTGTAAAAGCTGACAGACTTGATAGTTGCCACGACCACAACCATGCACAGGGTGACCGGGACGAAGAGCATGATAACGTGTTTGGCTCCATATTTCAAGGTCAGTTCCTCGTCCTCCTCTTCCTCGCTGTCGGTGACCACCTGAGGAGGCCGAGCAGAGGGAGGCTGGCCGTTGAGCTCGGGTCCTGCCTGGACAGCACTGGTGGGGTTCCCGATGTCAGTGTGCCGGTTGGCCTCTGTTCCATCAGTGGACACACTATTGACTTCCGCCATTGATACTCTTAAATAACTCGGACCTCATAGAAAAGCCAGAACTCTCTGGACCTGATAACCACAGCCGCTGtgaacacagaaacactggGGCGGAGAGGCTCCGGCCAAAGAGTCTTTACACAGGAGATCCCCCACTTACCTGAGAATGTCTTCCGGGTTT

Function

NR:

description
PREDICTED: presenilin-1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113704 True 509 lncRNA 0.52 3 29179869 29185938

Neighbor

gene id symbol gene type direction distance location
LOC111193134 ltbp2 coding upstream 210841 28854283 ~ 28969028 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding upstream 378630 28775149 ~ 28801239 (+)
LOC103029222 NA coding upstream 431441 28739241 ~ 28748428 (+)
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding upstream 504206 28662092 ~ 28675663 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding upstream 619775 28428946 ~ 28560094 (+)
adi1 adi1,LOC107753353 coding downstream 1637 29187575 ~ 29215673 (+)
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding downstream 79115 29265053 ~ 29324443 (+)
LOC103038403 myt1l coding downstream 228574 29414512 ~ 29625594 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding downstream 440697 29626635 ~ 29716871 (+)
LOC103028385 LOC103028385 coding downstream 548675 29734613 ~ 29737276 (+)
G84414 LOC108269999,LOC108423477,LOC107570253,LOC107684238,LOC107753355 non-coding upstream 3882 29172806 ~ 29175987 (+)
G84412 LOC107589761 non-coding upstream 17502 29160394 ~ 29162367 (+)
G84403 NA non-coding upstream 67220 29110612 ~ 29112649 (+)
G84402 NA non-coding upstream 75891 29103731 ~ 29103978 (+)
G84311 NA non-coding upstream 108210 29046743 ~ 29071659 (+)
G84462 NA non-coding downstream 154993 29340931 ~ 29341213 (+)
G84473 NA non-coding downstream 173259 29359197 ~ 29359659 (+)
G84484 NA non-coding downstream 203290 29389228 ~ 29389688 (+)
G84492 NA non-coding downstream 347884 29533822 ~ 29534343 (+)
G84534 NA non-coding downstream 556089 29742027 ~ 29742487 (+)
LOC107197844 NA other upstream 100971 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 136130 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 138262 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 154755 28999502 ~ 29025114 (+)
LOC107197841 NA other upstream 209030 28970264 ~ 28970839 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other downstream 781612 29967550 ~ 30015180 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 1420819 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 2269046 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 2563765 31749703 ~ 31805403 (+)
G85189 NA other downstream 2637648 31823586 ~ 31824388 (+)

Expression


Co-expression Network