G84473


Basic Information

Item Value
gene id G84473
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29359197 ~ 29359659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113778
CAAACAAGAATTAgattatattttcctttcagtaGAAAATGTTCATTCAAAATACTGTTTAGTCCATGAGGTGTATTCTGTCCTGAGGAGGTTTTATCACTTCTTGTTTGAGATGCCTTTAGCCCAGAGAAGTTCATGTGTCCAGCTAAACTATTTTGAGAAGTCCATTTCTATACATGATTGGCATGTCACAAGTGGTTGCAGGTAAACAACATGCCGCTTCTCAAAAggtcatatttacatatatggtAAAGCTGTAAATAGGGCGGTTGAAATTCTTAAGGCATGAGAGCTATAGGAGTGACTGTGAGGGACTATTTAAACGGTTTAGACTacaagagggagagagggagaaaaaccTGGGACACCGAGAATTGACaagctctctcccacactttgcttctgattgaaataaatatttattccgGTTAAGAAGACAGTGTGTACTGAGTTTTATTTCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113778 True 463 lncRNA 0.38 1 29359197 29359659

Neighbor

gene id symbol gene type direction distance location
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding upstream 34754 29265053 ~ 29324443 (+)
adi1 adi1,LOC107753353 coding upstream 143524 29187575 ~ 29215673 (+)
LOC111193134 ltbp2 coding upstream 390169 28854283 ~ 28969028 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding upstream 557958 28775149 ~ 28801239 (+)
LOC103029222 NA coding upstream 610769 28739241 ~ 28748428 (+)
LOC103038403 myt1l coding downstream 54853 29414512 ~ 29625594 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding downstream 266976 29626635 ~ 29716871 (+)
LOC103028385 LOC103028385 coding downstream 374954 29734613 ~ 29737276 (+)
LOC103027650 pdia6,LOC105893145,LOC106607563 coding downstream 398168 29757827 ~ 29766422 (+)
nol10 nol10 coding downstream 426367 29786026 ~ 29815914 (+)
G84462 NA non-coding upstream 17984 29340931 ~ 29341213 (+)
G84415 LOC108423477,LOC108269999,LOC107723284,LOC107589779 non-coding upstream 173259 29179869 ~ 29185938 (+)
G84414 LOC108269999,LOC108423477,LOC107570253,LOC107684238,LOC107753355 non-coding upstream 183210 29172806 ~ 29175987 (+)
G84412 LOC107589761 non-coding upstream 196830 29160394 ~ 29162367 (+)
G84403 NA non-coding upstream 246548 29110612 ~ 29112649 (+)
G84484 NA non-coding downstream 29569 29389228 ~ 29389688 (+)
G84492 NA non-coding downstream 174163 29533822 ~ 29534343 (+)
G84534 NA non-coding downstream 382368 29742027 ~ 29742487 (+)
G84535 NA non-coding downstream 386968 29746627 ~ 29746940 (+)
G84558 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378 non-coding downstream 499801 29859460 ~ 29864834 (+)
LOC107197844 NA other upstream 280299 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 315458 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 317590 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 334083 28999502 ~ 29025114 (+)
LOC107197841 NA other upstream 388358 28970264 ~ 28970839 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other downstream 607891 29967550 ~ 30015180 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 1247098 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 2095325 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 2390044 31749703 ~ 31805403 (+)
G85189 NA other downstream 2463927 31823586 ~ 31824388 (+)

Expression


Co-expression Network