G84484


Basic Information

Item Value
gene id G84484
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29389228 ~ 29389688 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113789
tgcgctagaaatgcgcactctctctgcttttagactctttggcctgttttttgcgctagaaatgcgcactctctctgcttttagactcttttgccccgtttttctgcgctagaaatgcgcaccctctccgcttttagactctttggcccgtttttctgcgccagaaatgcgcaccctctccgcttttagactcttttggcccgtttttttgcgctagaaatgcgcactctctccgcttttagactcttttgccccgtttttctgcgctagaaatgcgcaccctctccgcttttagactctttggcccgtttttctgcgccagaaatgcgcaccctctccgcttttagactctttgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113789 True 356 lncRNA 0.50 2 29389228 29389688

Neighbor

gene id symbol gene type direction distance location
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding upstream 64785 29265053 ~ 29324443 (+)
adi1 adi1,LOC107753353 coding upstream 173555 29187575 ~ 29215673 (+)
LOC111193134 ltbp2 coding upstream 420200 28854283 ~ 28969028 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding upstream 587989 28775149 ~ 28801239 (+)
LOC103029222 NA coding upstream 640800 28739241 ~ 28748428 (+)
LOC103038403 myt1l coding downstream 24824 29414512 ~ 29625594 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding downstream 236947 29626635 ~ 29716871 (+)
LOC103028385 LOC103028385 coding downstream 344925 29734613 ~ 29737276 (+)
LOC103027650 pdia6,LOC105893145,LOC106607563 coding downstream 368139 29757827 ~ 29766422 (+)
nol10 nol10 coding downstream 396338 29786026 ~ 29815914 (+)
G84473 NA non-coding upstream 29569 29359197 ~ 29359659 (+)
G84462 NA non-coding upstream 48015 29340931 ~ 29341213 (+)
G84415 LOC108423477,LOC108269999,LOC107723284,LOC107589779 non-coding upstream 203290 29179869 ~ 29185938 (+)
G84414 LOC108269999,LOC108423477,LOC107570253,LOC107684238,LOC107753355 non-coding upstream 213241 29172806 ~ 29175987 (+)
G84412 LOC107589761 non-coding upstream 226861 29160394 ~ 29162367 (+)
G84492 NA non-coding downstream 144134 29533822 ~ 29534343 (+)
G84534 NA non-coding downstream 352339 29742027 ~ 29742487 (+)
G84535 NA non-coding downstream 356939 29746627 ~ 29746940 (+)
G84558 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378 non-coding downstream 469772 29859460 ~ 29864834 (+)
G84591 NA non-coding downstream 542272 29931960 ~ 29932390 (+)
LOC107197844 NA other upstream 310330 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 345489 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 347621 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 364114 28999502 ~ 29025114 (+)
LOC107197841 NA other upstream 418389 28970264 ~ 28970839 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other downstream 577862 29967550 ~ 30015180 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 1217069 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 2065296 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 2360015 31749703 ~ 31805403 (+)
G85189 NA other downstream 2433898 31823586 ~ 31824388 (+)

Expression


Co-expression Network