G84535


Basic Information

Item Value
gene id G84535
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29746627 ~ 29746940 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113857
tgactttgaaagagctagatttatatatactgagacgctccaccggcaagcgaccacccccggtgggggaagggaaacatggcgccacccctgttcactttgatataggcaccctttctagtgtcacttaacgcgccttataatgcgatgcgccctatgtatggaaaaatagcagaaaataggcgttctttgatagtgcgtcttataatacggtgcgccttatagtccgaaaaatacggtacatttcACATTTCCTACATAAACCTATTGTTTTCTTAACATAAATTTAGAATAATGATATGATATATAGTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113857 True 314 lncRNA 0.41 1 29746627 29746940

Neighbor

gene id symbol gene type direction distance location
LOC103028385 LOC103028385 coding upstream 9351 29734613 ~ 29737276 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding upstream 29756 29626635 ~ 29716871 (+)
LOC103038403 myt1l coding upstream 121033 29414512 ~ 29625594 (+)
eipr1 tssc1,LOC107753352,LOC107687834,LOC107723283,LOC107589760 coding upstream 422184 29265053 ~ 29324443 (+)
adi1 adi1,LOC107753353 coding upstream 530954 29187575 ~ 29215673 (+)
LOC103027650 pdia6,LOC105893145,LOC106607563 coding downstream 10887 29757827 ~ 29766422 (+)
nol10 nol10 coding downstream 39086 29786026 ~ 29815914 (+)
odc1 odc1,LOC107753348,LOC107687839 coding downstream 100688 29847628 ~ 29853265 (+)
LOC103038716 LOC108423492,LOC103383742,LOC108269470,LOC108270315 coding downstream 242846 29989786 ~ 30008928 (+)
pask LOC107557849 coding downstream 401319 30148259 ~ 30173142 (+)
G84534 NA non-coding upstream 4140 29742027 ~ 29742487 (+)
G84492 NA non-coding upstream 212284 29533822 ~ 29534343 (+)
G84484 NA non-coding upstream 356939 29389228 ~ 29389688 (+)
G84473 NA non-coding upstream 386968 29359197 ~ 29359659 (+)
G84462 NA non-coding upstream 405414 29340931 ~ 29341213 (+)
G84558 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378 non-coding downstream 112520 29859460 ~ 29864834 (+)
G84591 NA non-coding downstream 185020 29931960 ~ 29932390 (+)
G84597 NA non-coding downstream 212435 29959375 ~ 29961212 (+)
G84623 NA non-coding downstream 324017 30070957 ~ 30072897 (+)
G84685 NA non-coding downstream 438943 30185883 ~ 30243942 (+)
LOC107197844 NA other upstream 667729 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 702888 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 705020 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 721513 28999502 ~ 29025114 (+)
LOC107197841 NA other upstream 775788 28970264 ~ 28970839 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other downstream 220610 29967550 ~ 30015180 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 859817 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 1708044 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 2002763 31749703 ~ 31805403 (+)
G85189 NA other downstream 2076646 31823586 ~ 31824388 (+)

Expression


Co-expression Network