G84558 (hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378)


Basic Information

Item Value
gene id G84558
gene name hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29859460 ~ 29864834 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113884
CAACGTTTTTAATGGAAACAAAAATAGAATTATCACAGCAACACTCCAGAGCTGTCATATTAACCACACATTTACAGTTTCCTTTATAAATACTGCAAGACATTGGTTATAAGCATGAACAGGCTGTTTCAGAACAAAGAATGTCAAGGTTAGTGAGTTTCATGTTCAGCTCCGGTGCCAAGGCCATAACTGTCATAAAGGATTTATAATGTTATGTTTATGATCCCGATTCTGCCTCGATTTTCCTTCATTCTTTCTGTTTAACAAAATGTGTTTACTTAATGTCAGAGAAATCACAGGGGAGATTCCAGTAACACTTTGCTTGATATGTTCCTGATGGCGTGCTAATGACTGTGCTTGGGGAAAAGGCTGGTCGTGAGGTCAGAAATGCTCCCTTGAGTATCTCCGTCAAGTAGCATCTTGTGATGAGCCATGGTTTCTATGGGGATGTGAATGGAAAACGATAATGTCCCATATGTGTAATCGACATTACTGAAATGTTGACAGAATTGCAGGAACATGCAGTGTGTGGCACAGATGGAGGAtatgtctcttatttttggaCGGAAACtgaagttataaaaaaaaaaaaagaaaggcatTCACATTGAGCTTCACTGTATTCCATAGTGGGCTTCCTAAACTGCACCATTAACCACAATGATAATGGCaagaatacaaaataacagACATCAATATGGTCCTTTTTATCACCacaacagtaataatataaaaacattgtcaaaaATACATGCAACAGCAAGACTGTAAAAGCAAAGCTTTCGACAAAATGCAGAaccaagaacaagaaaaagccattgcctttatataaaaaaaaacaaccagtcACAGACTTACGCACACTGACAAACGTTCATGCAGTCCATTGGTTGAAAGCGTAAGGATGTGGAGGATAAGCATTCTTAACCAGAAACTCATCAATGTTCACAAAACAatgaacaaaacacacacacaaaaaaaaaatacagtcctcctaaaataaaaaaagacttaagtAATTATACATTGTAACCCATAGGTCTTATGCCTGGCCATGCACATCTTTACTGCTCAGCCAAACGAACTTAATAGTCCTCAGCCGTGATgcttttataataaaacatatatatatttgtccaaTTTTCAATTATTCCATTAACTATTGAAACaaatacagaacaaaataaaaatacacgaCACCACATTTCTCATTCCGTAACACACGGTACTCTAAAGCATAACTCAGTGACCCTAGCACTGACTGATAACCGAGCTCAATGACCTCCTCACAATCACATTCACTGACTGGTCCCTTAAACCAGCACCAAACCCGATTCCAGGTTCTGTGAAGCGCTGTGAAGGAACGGTGACTCTCATGCTGCTGACTACAGTGATAAACTCCTACACAGTTACACCAACACTTACTGTGTGCACTTCAGACTCAAACAAACACTATAGTAACGTGCTGTGAGAGCGGGACAAAGCTCCGAGACTGGTGACAGAACCTAGCTCAGAACTGGCTGGCACTGCTGGGGTCACACTGCAGAAGACGGACAATGGAGGGGTCACTCCTGGCACCCTTAATGAACTCCTCCAAAGAAATTttgcCATCGTTATTGGTGTCCATCTGTCTGAAAATCTTATCTGTTCTCTTCTCTGGAGTGGACTCATCCTCCGGCATCTTCATCACAGAAGAAACCATCTTATAGATCGCCTGAACGATTTCCAGCATCTCTCCTCGGCTGATGTATCCATTCCCATCCAGGTCGTACATACTGAAGGCCCACTTCAGCTTCTGCTCTAACTTCCCTCGTGACGTCACACTCAGCGCGATGATGAACTCCCTGAAGTCAATGGTCCCGTCGCTGTTGGTGTCGAATGTTCTGAACACATGCTCTGCGAACTTGGAGGCGTCTCCGTAAGGGAAGAAGTTGGCGTAGATTTTCTTGAACTCCTCTACGGTGAGGTGGCCTGTGGGGCAGTCTTTCAGAAAGCCTTTGTACCACTCCTGCAGCTCATGGTCAGTGAACTCCGTGTTCTCCCCGCAGGTCGTGGAGCACCTCGGGCCTCAGCTTGCTGTTCTGTTTTCCCATGGTGCCCAAACGATTCCCTCGCAGGCAGGCTTTCCTCTCTGCTTCACTCACACTTTCAACTTCCCACAGAGATCTTTTGTGttccttctttttctgtctcttcgGCTCTTCTCCTTATCTCCTCAG

Function

symbol description
hpca Predicted to enable calcium ion binding activity. Is expressed in hatching gland; nervous system; neural rod; and neural tube. Human ortholog(s) of this gene implicated in torsion dystonia 2. Orthologous to human HPCA (hippocalcin).
hpcal1 Predicted to enable calcium ion binding activity. Orthologous to human HPCAL1 (hippocalcin like 1).

NR:

description
PREDICTED: hippocalcin-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113884 True 2219 lncRNA 0.43 3 29859460 29864834

Neighbor

gene id symbol gene type direction distance location
odc1 odc1,LOC107753348,LOC107687839 coding upstream 6195 29847628 ~ 29853265 (+)
nol10 nol10 coding upstream 43546 29786026 ~ 29815914 (+)
LOC103027650 pdia6,LOC105893145,LOC106607563 coding upstream 93038 29757827 ~ 29766422 (+)
LOC103028385 LOC103028385 coding upstream 122184 29734613 ~ 29737276 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding upstream 142589 29626635 ~ 29716871 (+)
LOC103038716 LOC108423492,LOC103383742,LOC108269470,LOC108270315 coding downstream 124952 29989786 ~ 30008928 (+)
pask LOC107557849 coding downstream 283425 30148259 ~ 30173142 (+)
mterf4 NA coding downstream 308752 30173586 ~ 30179026 (+)
LOC103030290 NA coding downstream 316086 30180920 ~ 30184812 (+)
LOC103031974 NA coding downstream 324227 30189061 ~ 30190170 (+)
G84535 NA non-coding upstream 112520 29746627 ~ 29746940 (+)
G84534 NA non-coding upstream 116973 29742027 ~ 29742487 (+)
G84492 NA non-coding upstream 325117 29533822 ~ 29534343 (+)
G84484 NA non-coding upstream 469772 29389228 ~ 29389688 (+)
G84473 NA non-coding upstream 499801 29359197 ~ 29359659 (+)
G84591 NA non-coding downstream 67126 29931960 ~ 29932390 (+)
G84597 NA non-coding downstream 94541 29959375 ~ 29961212 (+)
G84623 NA non-coding downstream 206123 30070957 ~ 30072897 (+)
G84685 NA non-coding downstream 321049 30185883 ~ 30243942 (+)
G84691 NA non-coding downstream 354304 30219138 ~ 30224378 (+)
LOC107197844 NA other upstream 780562 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 815721 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 817853 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 834346 28999502 ~ 29025114 (+)
LOC107197841 NA other upstream 888621 28970264 ~ 28970839 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other downstream 102716 29967550 ~ 30015180 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 741923 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 1590150 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 1884869 31749703 ~ 31805403 (+)
G85189 NA other downstream 1958752 31823586 ~ 31824388 (+)

Expression


Co-expression Network