hpcal1 (hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378,LOC106607246)


Basic Information

Item Value
gene id hpcal1
gene name hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378,LOC106607246
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29858977 ~ 29930575 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113906
CGGCAGTGAGCTGCTGCTGGGGGTCTGAGCGTACTGAGGGTCTGTCAGTGTTCGGCTCCAGCTGGTGAAGTGTAGCCGCTGTATCAGATTCAGGTTAACCCCCCTAAAGTCTGAGAACAGCCCGTCCTGAGGAACCTCTCCCCGGTCCTGCGGTTGACTGTTCTGAGCGCGGCTGAGGCGGACTCTCCCCGCCGGGTTTGAGCTCTCCTGTTTGGGGTTCACTGAGGGaaatgctgctgtgttcagCGCTGGGGTAAACTGGAGAAGGCGAGGTGGCTCGTATGGGTGTGAGGACTCTTCTGCAGCCGGTCATCCACTTCCAGCGCTCAGAGACAGTGAGAAACTTCAGGAGAACTAGTGCAAGGTCTGAGGAGATAAGGAGAAGAGCcgaagagacagaaaaagaaggaaCACAAAAGATCTCTGTGGGAAGTTGAAAGTGTGAGTGAAGCAGAGAGGAAAGCCTGCCTGCGAGGGAATCGTTTGGGCACCATGGGAAAACAGAACAGCAAGCTGAGGCCCGAGGTGCTCCACGACCTGCGGGGAGAACACGGAGTTCACTGACCATGAGCTGCAGGAGTGGTACAAAGGCTTTCTGAAAGACTGCCCCACAGGCCACCTCACCGTAGAGGAGTTCAAGAAAATCTACGCCAACTTCTTCCCTTACGGAGACGCCTCCAAGTTCGCAGAGCATGTGTTCAGAACATTCGACACCAACAGCGACGGGACCATTGACTTCAGGGAGTTCATCATCGCGCTGAGTGTGACGTCACGAGGGAAGTTAGAGCAGAAGCTGAAGTGGGCCTTCAGTATGTACGACCTGGATGGGAATGGATACATCAGCCGAGGAGAGATGCTGGAAATCGTTCAGGCGATCTATAAGATGGTTTCTTCTGTGATGAAGATGCCGGAGGATGAGTCCACTCCAGAGAAGAGAACAGATAAGATTTTCAGACAGATGGACACCAATAACGATGgcaaAATTTCTTTGGAGGAGTTCATTAAGGGTGCCAGGAGTGACCCCTCCATTGTCCGTCTTCTGCAGTGTGACCCCAGCAGTGCCAGCCAGTTCTGAGCTAGGTTCTGTCACCAGTCTCGGAGCTTTGTCCCGCTCTCACAGCACGTTACTATAGTGTTTGTTTGAGTCTGAAGTGCACACAGTAAGTGTTGGTGTAACTGTGTAGGAGTTTATCACTGTAGTCAGCAGCATGAGAGTCACCGTTCCTTCACAGCGCTTCACAGAACCTGGAATCGGGTTTGGTGCTGGTTTAAGGGACCAGTCAGTGAATGTGATTGGTTATCAGTCAGTGCTAGGGTCACTGAGTTATGCTTTAGAGTACCGTGTGTTACGGAATGAGAAATGTGGTGtcgtgtatttttattttgttctgtatttGTTTCAATAGTTAATGGAATAATTGAAAAttggacaaatatatatatgttttattataaaagcATCACGGCTGAGGACTATTAAGTTCGTTTGGCTGAGCAGTAAAGATGTGCATGGCCAGGCATAAGACCTATGGGTTACAATGTATAATTacttaagtctttttttattttaggaggactgtattttttttttgtgtgtgtgttttgttcatTGTTTTGTGAACATTGATGAGTTTCTGGTTAAGAATGCTTATCCTCCACATCCTTACGCTTTCAACCAATGGACTGCATGAACGTTTGTCAGTGTGCGTAAGTCTGTgactggttgtttttttttatataaaggcaatggctttttcttgttcttggtTCTGCATTTTGTCGAAAGCTTTGCTTTTACAGTCTTGCTGTTGCATGTATttttgacaatgtttttatattattactgttgtGGTGATAAAAAGGACCATATTGATGTctgttattttgtattcttGCCATTATCATTGTGGTTAATGGTGCAGTTTAGGAAGCCCACTATGGAATACAGTGAAGCTCAATGTGAatgcctttctttttttttttttataacttcaGTTTCCGtccaaaaataagagacataTCCTCCATCTGTGCCACACACTGCATGTTCCTGCAATTCTGTCAACATTTCAGTAATGTCGATTACACATATGGGACATTATCGTTTTCCATTCACATCCCCATAGAAACCATGGCTCATCACAAGATGCTACTTGACGGAGATACTCAAGGGAGCATTTCTGACCTCACGACCAGCCTTTTCCCCAAGCACAGTCATTAGCACGCCATCAGGAACATATCAAGCAAAGTGTTACTGGAATCTCCCCTGTGATTTCTCTGACATTAAGTAAACACATTTTGTTAAACAGAAAGAATGAAGGAAAATCGAGGCAGAATCGGGATCATAAACATAACATTATAAATCCTTTATGACAGTTATGGCCTTGGCACCGGAGCTGAACATGAAACTCACTAACCTTGACATTCTTTGTTCTGAAACAGCCTGTTCATGCTTATAACCAATGTCTTGCAGTATTTATAAAGGAAACTGTAAATGTGTGGTTAATATGACAGCTCTGGAGTGTTGCTGTGATAATTCTATTTTTGTTTCCATTAAAAACG
>TU113907
AAGGGCAGCTAAAACAATGATTTGGCCCTTTGCCAGACCAGGAAGAGAGTACAGAGTGCAAGGTCTGAGGAGATAAGGAGAAGAGCcgaagagacagaaaaagaaggaaCACAAAAGATCTCTGTGGGAAGTTGAAAGTGTGAGTGAAGCAGAGAGGAAAGCCTGCCTGCGAGGGAATCGTTTGGGCACCATGGGAAAACAGAACAGCAAGCTGAGGCCCGAGGTGCTCCACGACCTGCGGGGAGAACACGGAGTTCACTGACCATGAGCTGCAGGAGTGGTACAAAGGCTTTCTGAAAGACTGCCCCACAGGCCACCTCACCGTAGAGGAGTTCAAGAAAATCTACGCCAACTTCTTCCCTTACGGAGACGCCTCCAAGTTCGCAGAGCATGTGTTCAGAACATTCGACACCAACAGCGACGGGACCATTGACTTCAGGGAGTTCATCATCGCGCTGAGTGTGACGTCACGAGGGAAGTTAGAGCAGAAGCTGAAGTGGGCCTTCAGTATGTACGACCTGGATGGGAATGGATACATCAGCCGAGGAGAGATGCTGGAAATCGTTCAGGCGATCTATAAGATGGTTTCTTCTGTGATGAAGATGCCGGAGGATGAGTCCACTCCAGAGAAGAGAACAGATAAGATTTTCAGACAGATGGACACCAATAACGATGgcaaAATTTCTTTGGAGGAGTTCATTAAGGGTGCCAGGAGTGACCCCTCCATTGTCCGTCTTCTGCAGTGTGACCCCAGCAGTGCCAGCCAGTTCTGAGCTAGGTTCTGTCACCAGTCTCGGAGCTTTGTCCCGCTCTCACAGCACGTTACTATAGTGTTTGTTTGAGTCTGAAGTGCACACAGTAAGTGTTGGTGTAACTGTGTAGGAGTTTATCACTGTAGTCAGCAGCATGAGAGTCACCGTTCCTTCACAGCGCTTCACAGAACCTGGAATCGGGTTTGGTGCTGGTTTAAGGGACCAGTCAGTCATTGAGCTCGGTTATCAGTCAGTGCTAGGGTCACTGAGTTATGCTTTAGAGTACCGTGTGTTACGGAATGAGAAATGTGGTGtcgtgtatttttattttgttctgtatttGTTTCAATAGTTAATGGAATAATTGAAAAttggacaaatatatatatgttttattataaaagcATCACGGCTGAGGACTATTAAGTTCGTTTGGCTGAGCAGTAAAGATGTGCATGGCCAGGCATAAGACCTATGGGTTACAATGTATAATTacttaagtctttttttattttaggaggactgtattttttttttgtgtgtgtttttattatttgtctgttGAGTTGAAAGCTGTCAAATTTTCCATGAGGACCACACTTTTTGACATTTGTATGGATTACTTATTAGGggtataagaaaatattgatgttTTGAAGTTTTTGCCGTATTTGGTTTTGCAATATTGCATCAATTctcaaaaacactgatttttagtaAATGGTTAACATGCAAATGTTTACTGATAGACTTCATAGATTAATTTAGAGACACAATATTTTGTTCCACAATACAGATCTGGACACAACATGAAAACCTTTAtcttcacatttatttatatatatatatatatatatatttaagtatatcaaTGTTTGATCTTCATTCAACGATTGAAATTACAATCCAGTTACAATCCTGCATTGAAAGTGAATGTGATTTCTGGGTCAGGCAGTCCAGGACCAGTGGAACCATGTGCTTTAAGCAGATG
>XM_022673131.1
TGTGGATATGAGCTGCGGGTCCGGCAGTGAGCTGCTGCTGGGGGTCTGAGCGTACTGAGGGTCTGTCAGTGTTCGGCTCCAGCTGGTGAAGTGTAGCCGCTGTATCAGATTCAGGTTAACCCCCCTAAAGTCTGAGAACAGCCCGTCCTGAGGAACCTCTCCCCGGTCCTGCGGTTGACTGTTCTGAGCGCGGCTGAGGCGGACTCTCCCCGCCGGGTTTGAGCTCTCCTGTTTGGGGTTCACTGAGGGaaatgctgctgtgttcagCGCTGGGGTAAACTGGAGAAGGCGAGGTGGCTCGTATGGGTGTGAGGACTCTTCTGCAGCCGGTCATCCACTTCCAGCGCTCAGAGACAGTGAGAAACTTCAGGAGAACTGTAATCTGGAACCCCCCCGGCGCCAAAGGTTTCTTCCCACCCCATTAAGGGTACAAAAGCTGGGTGACCCGCGCGCTGCCACTCCATAAGGAAGCCGAGTGCAAGGTCTGAGGAGATAAGGAGAAGAGCcgaagagacagaaaaagaaggaaCACAAAAGATCTCTGTGGGAAGTTGAAAGTGTGAGTGAAGCAGAGAGGAAAGCCTGCCTGCGAGGGAATCGTTTGGGCACCATGGGAAAACAGAACAGCAAGCTGAGGCCCGAGGTGCTCCACGACCTGCGGGAGAACACGGAGTTCACTGACCATGAGCTGCAGGAGTGGTACAAAGGCTTTCTGAAAGACTGCCCCACAGGCCACCTCACCGTAGAGGAGTTCAAGAAAATCTACGCCAACTTCTTCCCTTACGGAGACGCCTCCAAGTTCGCAGAGCATGTGTTCAGAACATTCGACACCAACAGCGACGGGACCATTGACTTCAGGGAGTTCATCATCGCGCTGAGTGTGACGTCACGAGGGAAGTTAGAGCAGAAGCTGAAGTGGGCCTTCAGTATGTACGACCTGGATGGGAATGGATACATCAGCCGAGGAGAGATGCTGGAAATCGTTCAGGCGATCTATAAGATGGTTTCTTCTGTGATGAAGATGCCGGAGGATGAGTCCACTCCAGAGAAGAGAACAGATAAGATTTTCAGACAGATGGACACCAATAACGATGgcaaAATTTCTTTGGAGGAGTTCATTAAGGGTGCCAGGAGTGACCCCTCCATTGTCCGTCTTCTGCAGTGTGACCCCAGCAGTGCCAGCCAGTTCTGAGCTAGGTTCTGTCACCAGTCTCGGAGCTTTGTCCCGCTCTCACAGCACGTTACTATAGTGTTTGTTTGAGTCTGAAGTGCACACAGTAAGTGTTGGTGTAACTGTGTAGGAGTTTATCACTGTAGTCAGCAGCATGAGAGTCACCGTTCCTTCACAGCGCTTCACAGAACCTGGAATCGGGTTTGGTGCTGGTTTAAGGGACCAGTCAGTGAATGTGATTGTGAGGAGGTCATTGAGCTCGGTTATCAGTCAGTGCTAGGGTCACTGAGTTATGCTTTAGAGTACCGTGTGTTACGGAATGAGAAATGTGGTGtcgtgtatttttattttgttctgtatttGTTTCAATAGTTAATGGAATAATTGAAAAttggacaaatatatatatgttttattataaaagcATCACGGCTGAGGACTATTAAGTTCGTTTGGCTGAGCAGTAAAGATGTGCATGGCCAGGCATAAGACCTATGGGTTACAATGTATAATTacttaagtctttttttattttaggaggactgtattttttttttgtgtgtgtgttttgttcatTGTTTTGTGAACATTGATGAGTTTCTGGTTAAGAATGCTTATCCTCCACATCCTTACGCTTTCAACCAATGGACTGCATGAACGTTTGTCAGTGTGCGTAAGTCTGTgactggttgtttttttttatataaaggcaatggctttttcttgttcttggtTCTGCATTTTGTCGAAAGCTTTGCTTTTACAGTCTTGCTGTTGCATGTATttttgacaatgtttttatattattactgttgtGGTGATAAAAAGGACCATATTGATGTctgttattttgtattcttGCCATTATCATTGTGGTTAATGGTGCAGTTTAGGAAGCCCACTATGGAATACAGTGAAGCTCAATGTGAatgcctttctttttttttttttataacttcaGTTTCCGtccaaaaataagagacataTCCTCCATCTGTGCCACACACTGCATGTTCCTGCAATTCTGTCAACATTTCAGTAATGTCGATTACACATATGGGACATTATCGTTTTCCATTCACATCCCCATAGAAACCATGGCTCATCACAAGATGCTACTTGACGGAGATACTCAAGGGAGCATTTCTGACCTCACGACCAGCCTTTTCCCCAAGCACAGTCATTAGCACGCCATCAGGAACATATCAAGCAAAGTGTTACTGGAATCTCCCCTGTGATTTCTCTGACATTAAGTAAACACATTTTGTTAAACAGAAAGAATGAAGGAAAATCGAGGCAGAATCGGGATCATAAACATAACATTATAAATCCTTTATGACAGTTATGGCCTTGGCACCGGAGCTGAACATGAAACTCACTAACCTTGACATTCTTTGTTCTGAAACAGCCTGTTCATGCTTATAACCAATGTCTTGCAGTATTTATAAAGGAAACTGTAAATGTGTGGTTAATATGACAGCTCTGGAGTGTTGCTGTGATAATTCTATTTTTGTTTCCATTAAAAACGTTGTGCTTCCTTTTTGGATTGAAA

Function

symbol description
hpca Predicted to enable calcium ion binding activity. Is expressed in hatching gland; nervous system; neural rod; and neural tube. Human ortholog(s) of this gene implicated in torsion dystonia 2. Orthologous to human HPCA (hippocalcin).
hpcal1 Predicted to enable calcium ion binding activity. Orthologous to human HPCAL1 (hippocalcin like 1).

NR:

description
PREDICTED: hippocalcin-like protein 1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23847 HPCAL1; hippocalcin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU113906 False 2562 TUCP 0.45 5 29859463 29903238
TU113907 False 1743 TUCP 0.42 6 29858977 29930575
XM_022673131.1 True 2723 mRNA 0.45 6 29859439 29903259

Neighbor

gene id symbol gene type direction distance location
LOC103027342 NA coding downstream 74152 29766869 ~ 29784825 (-)
LOC103027977 NA coding downstream 103557 29746797 ~ 29755420 (-)
trappc12 trappc12 coding downstream 594036 29216720 ~ 29264941 (-)
LOC111193242 NA coding downstream 659928 29188636 ~ 29199049 (-)
LOC103047839 psen1,LOC108423477,LOC108269999,LOC107684238,LOC107687832 coding downstream 673048 29165348 ~ 29185929 (-)
sdc1 NA coding upstream 28748 29959323 ~ 29977998 (-)
hs1bp3 NA coding upstream 140364 30070939 ~ 30081434 (-)
trnas-aga_9 NA coding upstream 150077 30080652 ~ 30080733 (-)
ltbp2 NA coding upstream 154843 30085418 ~ 30141147 (-)
LOC103031662 acsm3,LOC108428295,LOC107749205,LOC107682913 coding upstream 431651 30362226 ~ 30395217 (-)
G84587 NA non-coding downstream 3074 29855433 ~ 29855903 (-)
G84575 NA non-coding downstream 5697 29797304 ~ 29853280 (-)
G84571 nol10 non-coding downstream 66665 29785855 ~ 29792312 (-)
G84566 NA non-coding downstream 96417 29762195 ~ 29762560 (-)
G84541 NA non-coding downstream 116489 29741985 ~ 29742488 (-)
G84592 NA non-coding upstream 1920 29932495 ~ 29932712 (-)
G84649 NA non-coding upstream 16089 29946664 ~ 30015122 (-)
G84664 NA non-coding upstream 87816 30018391 ~ 30019249 (-)
G84682 NA non-coding upstream 213256 30143831 ~ 30144044 (-)
G84731 NA non-coding upstream 217678 30148253 ~ 30150672 (-)
G84579 nol10 other downstream 48700 29808529 ~ 29810277 (-)
G84392 NA other downstream 782862 29075476 ~ 29076115 (-)
rps6kl1 rps6kl1 other downstream 1163995 28675598 ~ 28694982 (-)
G84215 NA other downstream 1502432 28344589 ~ 28356545 (-)
LOC103043566 LOC108423527,LOC108270165,LOC100330554,LOC107677688,LOC103153288,LOC103458816,LOC106945627,LOC103355980,LOC102293757 other downstream 2010533 27830628 ~ 27848444 (-)
G84663 LOC100707891,LOC103372284 other upstream 78052 30008627 ~ 30074937 (-)
map6d1 LOC108428296 other upstream 403463 30334038 ~ 30355720 (-)
LOC103036386 camk2n2,LOC107659987,LOC107557885 other upstream 649368 30579943 ~ 30583821 (-)
mrpl34 mrpl34 other upstream 889544 30820119 ~ 30822698 (-)
LOC111193156 NA other upstream 2519056 32449631 ~ 32491820 (-)

Expression


Co-expression Network