LOC103025336 (rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565)


Basic Information

Item Value
gene id LOC103025336
gene name rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29967550 ~ 30015180 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113939
tttttttttttttttaaaCTGCCAGCTGTGGTGAGACTGCAGTGCGAGCAGGGCAGCTGTGCTTTTGTTGCACAGTGAGAGACTTGATGCAGCACTAAGAAGGGGGATGGAGGGGTGGGGGATGGGTGCAAGTGGTCAGTCAGTGTGTTCCGGGACTGTGTATTGTGCTGTTGCAAAAGTCACCTCGATTCATTGTATGCACACACATTttcaacacacatacatacgtaCATACATGCCCACACCATGAAATGTTAAAGTGTGGGCCCATGCTGGTGAATCTGCATGCTTAAATAGCCCAGCATTGTCTGAATCTCCGTTTGTTGTTTCCATTCTTGTTGCACTGGGTGCCCGTGCAGTCTGCTACCCCACCCTAGCGCTCGGTAAACTCGTACGCAGCCCCTCTGCTCGAGCACCAACAATGAAGTTTGTCACGATTGCACTGATGGGATTATGGGAGCTGCTTTTGTTGATTTGGGGTGTATAGGGCTCGGCTGGGATTGGCTGGGTTGGGGTGTGGGCCCTTTTCTGCTTTGGCTCAGCTCTGGGTTAGCGTGACACACTACGCACACCCTCTGTTACAGAGGCGGCCTATGAAGTTCAGCTCTGAAGCTCTgtacattttctgttttgttgtttttaggaCTTTTATATGTCTTTAAGCCTGTGGTACCACTGCATTAACTTCAGACTGACCTGGGTCAGCTCTGAGGCGTTGGCTGTCATGTTTACAGTAACCCAgcaatgaacagaaaaaataaaataaatattcaattGCAATACAAGTATGTGTCTTGTGTTTATGTACAAGTGTCAAATATGTGCCTTTAAGCAATATTGCAC
>XM_015607907.2
TCTGAAATCCTGAGAACTGAACAGTGAGAGGCTGAGGTGGTGAGCTGCTGTGTCTGAAGTGAGAGGAGCTACTTTATAAGCTGGAGATCCTGAATAAGCTACACAGTCTCAGCTGGAGATACTGAAGAAGCAACACAGCCTCAGCCTGGACAGTTTTCTAGCTGTGTATTTCATTTGATCCTGTTTTAATAAGGATTTTCAGAGTTTTAATCCGTGCGTAAAAGCAGCGAGGACACACCGAGCACATGGCTGCTATCCGTAAGaagctggtggtggtgggggacGGGGCGTGCGGTAAGACGTGTCTGCTCATCGTCTTCAGCAAGGATGAGTTCCCTGAGGTCTACGTGCCCACCGTCTTCGAGAACTACGTGGCTGACATCGAGGTGGACAGCAAGCAGGTGGAGCTGGCGCTGTGGGACACGGCCGGCCAGGAGGACTACGACCGCCTGCGCCCCCTTTCCTATCCGGACACGGACGTGATCCTCATGTGCTTCTCCGTGGACAGCCCGGACTCTCTGGAGAACATCCCGGAGAAGTGGGTGCCTGAGGTCAAGCACTTCTGTCCCAACGTGCCCATCATCTTGGTGGCCAACAAGAAGGATCTGCGCAACGACGAGAGCGTGCGCGGCGAGCTGGCGCGCATGAAGCAGGAGCCGGTGCGCGCTGAGGACGGCCGCGCCATGGCCGTGCGCATCGGTGCCTACGACTACCTGGAGTGCTCGGCTAAGACCAAGGACGGCGTACGGGAGGTGTTTGAGACTGCCACGCGTGCTGCGCTCCAGAAGAGGTCCAGGCCGGCTGGGGGCTGCGCGAACTGCTGCAAGCTCTTGTGAACTTGTGTAAAAACTCATGtaaacttctgtgaaatcatGTGAGCTCCTGTACGAACTCCTACGAGAAGAGGACATGGTTCCCCAGACAAGAAACGTAACATGCTAATGTGGGGCTCACTTAGGTGGAACATGGTCTGGGTGGGTTCCAATTGAGTTCCAGTTGGGTTCCAGGTCGGTTCTAAATGGGcatgggctctgagtgggtttgtaCTTGTGTTCTAACGACTAGTTGGGCTTCCCATTTAGGGGTTCCATCTAGGCcctatatttgtgtgtgtgtgcaaggtACAAACCAGGTGGGGCCCATGTTGACTCCCATGTTTAAACTCCTCCTGGTCCCATCATTGACACTGACTGACTCCATGCCTTGTGGAGCCAACATGGACAAACCCATGGACAGAACTTTCTAAAAGGACCCAGTTGACTTGTTGACCCAGCCTGGAGCCTGGGTCTAGTTCTTTACTCATGGAcaagttggggggggggggggggtgtttggaGAGATGAGGGGGGAGGGGTCTGAAGTGTCCCTTGATGCCCTCCCTGCACAAACACTaaaaagtagagaaagaaggaaaagaatGGACAcagaacagtgagagagagagagagagaggggatggTAGGGGGCTTGTGAACCCCACCCAATCTCaactttgtatctctctctgtgtttgtgtgtctctctatcttgctctctttttttctctcttttgctttgtTGTTTTGGTGCTGTGTGGCAGCCGAAAAAGACACAGGCACTATACTATTCACACTGCAAgtactactaccaccaccaacaacaacaacaacagcatgCTCTGGATAATGCATGCATGGGTGGGTCTGGGTGGTTGGGTAGCTTGGGCACaatatctgctgctgctgctgccacacAGAACAAAGTACAGAACAATGTAACTTATAGGCTTAACACTGTATACAGCCTTGCCTTGTTTATATGACACATGCATAGGgctctgtattttgtttttttggggattttttttaaatgagagaaatgagaagaaaaagaatatgCCTTGCCACTGCATTGAGGTGGTCTTTGGGATGTACACTGGGATGACcctcaaaaaaaagaacaggagGAGACTTGTACAAAATGCTAGCTATCTAGTCAGCTGCCAGCTGTGGTGAGACTGCAGTGCGAGCAGGGCAGCTGTGCTTTTGTTGCACAGTGAGAGACTTGATGCAGCACTAAGAAGGGGGATGGAGGGGTGGGGGATGGGTGCAAGTGGTCAGTCAGTGTGTTCCGGGACTGTGTATTGTGCTGTTGCAAAAGTCACCTCGATTCATTGTATGCACACACATTttcaacacacatacatacgtaCATACATGCCCACACCATGAAATGTTAAAGTGTGGGCCCATGCTGGTGAATCTGCATGCTTAAATAGCCCAGCATTGTCTGAATCTCCGTTTGTTGTTTCCATTCTTGTTGCACTGGGTGCCCGTGCAGTCTGCTACCCCACCCTAGCGCTCGGTAAACTCGTACGCAGCCCCTCTGCTCGAGCACCAACAATGAAGTTTGTCACGATTGCACTGATGGGATTATGGGAGCTGCTTTTGTTGATTTGGGGTGTATAGGGCTCGGCTGGGATTGGCTGGGTTGGGGTGTGGGCCCTTTTCTGCTTTGGCTCAGCTCTGGGTTAGCGTGACACACTACGCACACCCTCTGTTACAGAGGCGGCCTATGAAGTTCAGCTCTGAAGCTCTgtacattttctgttttgttgtttttaggaCTTTTATATGTCTTTAAGCCTGTGGTACCACTGCATTAACTTCAGACTGACCTGGGTCAGCTCTGAGGCGTTGGCTGTCATGTTTACAGTAACCCAgcaatgaacagaaaaaataaaataaatattcaattGCAATACAA

Function

symbol description
rhob Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Involved in several processes, including cellular response to hydrogen peroxide; cellular response to ionizing radiation; and regulation of cell migration. Located in cleavage furrow and endosome membrane. Biomarker of breast cancer.

NR:

description
rho-related GTP-binding protein RhoB

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07856 RHOB; Ras homolog gene family, member B

RNA

RNA id representative length rna type GC content exon number start site end site
TU113939 False 843 lncRNA 0.47 2 29967550 30015180
XM_015607907.2 True 2745 mRNA 0.51 1 30012378 30015122

Neighbor

gene id symbol gene type direction distance location
odc1 odc1,LOC107753348,LOC107687839 coding upstream 114285 29847628 ~ 29853265 (+)
nol10 nol10 coding upstream 151636 29786026 ~ 29815914 (+)
LOC103027650 pdia6,LOC105893145,LOC106607563 coding upstream 201128 29757827 ~ 29766422 (+)
LOC103028385 LOC103028385 coding upstream 230274 29734613 ~ 29737276 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding upstream 250679 29626635 ~ 29716871 (+)
pask LOC107557849 coding downstream 133079 30148259 ~ 30173142 (+)
mterf4 NA coding downstream 158406 30173586 ~ 30179026 (+)
LOC103030290 NA coding downstream 165740 30180920 ~ 30184812 (+)
LOC103031974 NA coding downstream 173881 30189061 ~ 30190170 (+)
LOC103029649 klhl24,LOC107659963,LOC107721788,LOC107663692,LOC107721905 coding downstream 181537 30196717 ~ 30238525 (+)
G84597 NA non-coding upstream 6338 29959375 ~ 29961212 (+)
G84591 NA non-coding upstream 35160 29931960 ~ 29932390 (+)
G84558 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378 non-coding upstream 102716 29859460 ~ 29864834 (+)
G84535 NA non-coding upstream 220610 29746627 ~ 29746940 (+)
G84534 NA non-coding upstream 225063 29742027 ~ 29742487 (+)
G84623 NA non-coding downstream 55777 30070957 ~ 30072897 (+)
G84685 NA non-coding downstream 170703 30185883 ~ 30243942 (+)
G84691 NA non-coding downstream 203958 30219138 ~ 30224378 (+)
G84692 NA non-coding downstream 232276 30247456 ~ 30248237 (+)
G84693 NA non-coding downstream 233846 30249026 ~ 30249482 (+)
LOC107197844 NA other upstream 888652 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 923811 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 925943 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 942436 28999502 ~ 29025114 (+)
LOC107197841 NA other upstream 996711 28970264 ~ 28970839 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 591577 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 1439804 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 1734523 31749703 ~ 31805403 (+)
G85189 NA other downstream 1808406 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 2184003 32199183 ~ 32218762 (+)

Expression


Co-expression Network