G84597


Basic Information

Item Value
gene id G84597
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29959375 ~ 29961212 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113940
GTAATAAATAGAGAGGTTTGTACAAACATGAAATCATGACAAAAGGTCCGATTTGCTTTTGCACAGCAGCAAAAcaaactaaatgaaaaaaaaaaaacgaacaatGCAGCTGTAAGGCCTGGAAGCAAGTCCAATCACAGTCCAAGTCTAATCTGGCATGAGCTCAATAATGTGTCTTTGTCATGGTCTTCTCTACAAATATGTCCTATGCACAAATGATTCAGCTAAATAGCTAACCTGAGGCCCAGTTTAAggcaccttaaaaaaaaaaaatctctccatTTGTAAAGGTATATCAACACGAAATCAAACTCAAATATATGGAagggcaaaaagaaaaaaaaaaaacatatattttacatgtattACATGGAATCACTGTGTGTTATAGACAGTATACTGTTAATTTGTTCTATAGGAAAAGTGTCTCATTCCCAAGTTGAGAATGTTAAGCATTCGCAgcacacagtaaaaaaacatcagaGATGCACCAATATGCTGTTATTTTCCTTGTATTGGCCAAAACGTTGCCAGTGCTGGCTGCTTAAACATTGATTAGTATTAAGAAAAATATCTGTATAAAGGCAGATATTTCAGCATTTCAGCAAAACACCATTAAgcttattccaaataaaacacacagtacTGTGCAGAACTCTCACGCACCTTTTCTAAGAGATTTATAATGAATAAACGGCTTATCTGGACCCTAAGTGttgatttactttaatactAGTACTACACTGATAatcaaattaatataaatagctTTAATGGTGGTTTTACATCTCCACAGCTCTTAGTTCTCATCATATGAACACTGGTTGTTTGGTGATGGAATTGAACACGTCCACTGGAACGCTGGCTTGGGATGTCTAGGGAAAAACCTGAATCACAAATACAACTTTCTTGAAAATTCTTGAGGAATTCGTCTtacttttactgtgtttatgtttatctgcatCTGTTACTTCTGCACAATACTGCTTATGTGATCAAAATTACTGGAAACTTCCCACTGCATGGTAGCTACACTAACTGGCTCCACTCATCTCAGGTTTTTGGCTCATACATTAGGCAAATCTGTTACCTAGAACTGGGTACTTTAATATAAGCTGGCACAGTTTATAAATGAGCCGAGTGGGAACTAAAATATGATGTAAAAAAGCTTGCAGAGTGCTGattggacagagagagaatggtTACTAAACACAATCCAATCAGCAACCCCCAGCTGTTATAAAGATGGTATTAACAGTGTCTTGCAATATTACCGGCTACATTTTCAGATGGTGGGCTGGGCAGTAAACTTAAGTAGCATAGGAACCTCACAGTGGCAAAGCTGAATATACAGAAGGTACATCTAATATAcccataaatatatacaaagatATATTCCAAATATGATGATGCATCCCCAACACTTCTGAAAAAGTTTTGCTTATTTCCTTATTTAATGAATTTGCAAGATATCCTTTTAAACACTATTGACACATTCTGAGGAGTATTACTACACAATGGGGCAGATTTCCAACCACgcattaagcctagtcttaaaCTACACAGCATTATGAATGAAGATTTCCAACTGAAGGGAACATAGTCTACAAACAGGCTTAATGTTTGggaaaccacaaaaaaaaaaaaaaaaaaaaaacaagaatgtgAGAAAGTCCATTCTAGCAAAGCAGTTCCACAATACAAGTGacttaagaaaaaagaaagacaaaaatcaACAATAGAAACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113940 True 1748 lncRNA 0.35 2 29959375 29961212

Neighbor

gene id symbol gene type direction distance location
odc1 odc1,LOC107753348,LOC107687839 coding upstream 106110 29847628 ~ 29853265 (+)
nol10 nol10 coding upstream 143461 29786026 ~ 29815914 (+)
LOC103027650 pdia6,LOC105893145,LOC106607563 coding upstream 192953 29757827 ~ 29766422 (+)
LOC103028385 LOC103028385 coding upstream 222099 29734613 ~ 29737276 (+)
pxdn pxdn,LOC107680176,LOC107687838 coding upstream 242504 29626635 ~ 29716871 (+)
LOC103038716 LOC108423492,LOC103383742,LOC108269470,LOC108270315 coding downstream 28574 29989786 ~ 30008928 (+)
pask LOC107557849 coding downstream 187047 30148259 ~ 30173142 (+)
mterf4 NA coding downstream 212374 30173586 ~ 30179026 (+)
LOC103030290 NA coding downstream 219708 30180920 ~ 30184812 (+)
LOC103031974 NA coding downstream 227849 30189061 ~ 30190170 (+)
G84591 NA non-coding upstream 26985 29931960 ~ 29932390 (+)
G84558 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378 non-coding upstream 94541 29859460 ~ 29864834 (+)
G84535 NA non-coding upstream 212435 29746627 ~ 29746940 (+)
G84534 NA non-coding upstream 216888 29742027 ~ 29742487 (+)
G84492 NA non-coding upstream 425032 29533822 ~ 29534343 (+)
G84623 NA non-coding downstream 109745 30070957 ~ 30072897 (+)
G84685 NA non-coding downstream 224671 30185883 ~ 30243942 (+)
G84691 NA non-coding downstream 257926 30219138 ~ 30224378 (+)
G84692 NA non-coding downstream 286244 30247456 ~ 30248237 (+)
G84693 NA non-coding downstream 287814 30249026 ~ 30249482 (+)
LOC107197844 NA other upstream 880477 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 915636 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 917768 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 934261 28999502 ~ 29025114 (+)
LOC107197841 NA other upstream 988536 28970264 ~ 28970839 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other downstream 6338 29967550 ~ 30015180 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 645545 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 1493772 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 1788491 31749703 ~ 31805403 (+)
G85189 NA other downstream 1862374 31823586 ~ 31824388 (+)

Expression


Co-expression Network