G84623


Basic Information

Item Value
gene id G84623
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30070957 ~ 30072897 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU113968
TGACATTTATTCAATTAGCAGTGATCTGCTGCCTTACGTAAGACACTGAAGTGCTACAAGCATGCAAAAGAAATGCCACAATGTCTTAAGATTCATCTCTTGTACTTTTCTGTTCACAAAACACTCTATTAAGAAatcacaaaattactaaaatgtacataaaaaatcacagaaaatatacaatttgaataatatattttgtagaGCATAATTTCAGTAGaaacattttcacaaaaaataaagataaaggtTTCAATAGTGctgattaaaacagcaaaatcatGTTATAAACAAGTACGCTCCACTATTATCAGTTTCCTACTCAATAACCTCTTAGTATATACCAGGATCTAAACCATGGTTCATTTGTTTGTTATATAGTATACATATGATCCAGTTTGATAACTGGAGTTTAGCGACTAGACTAAATAACTAATTAATACACTATGTCTACATCACCTACTGTACGTAGGCTGCGTCTCTCCAATCTTGATTtgtttgtagaatgttttaaTTTAGGTAAGTTGCCTTTACAAGTGTTGTgctgaaaatatacaaaatgaataatatattttgtagaGCATCATTTCAGTAGaaacattttcacaaaaaataaagataaaggtTTCAATAGTGCTGATTAAAAGTACTTCAATGCAAAAATCATTCATAACGCAAAATCATGTTATAAACGAGTATGCTCCACTATTATCAGTTTCCTACTCATTAAACCAAGTGCTGATGAACTAGTGCTACATGTTATATATCTTGCAGCATCATAATTGTAGTGTGCACATGTGCAATTGTTACATGGCAGGATGTGCAATGTTATGTAAGGCAAATCAAATCATGCTTGTCACGCTACAATTTGCTTAATAAAAATGTCCAGGCATTTTCCATCAGATATAGATTCTGAATctgatttcattcattttacctACTATACACAAAgtgcataattattattaatgaattaacGAATATACATTAACACCATATTGGATCATTCTGCAGCCCTTAAAGatacattataaaatgtatttgtagaATTTGCCCTTGCAACAGTTGTTACACCCTATAAATACTGCACATTGCATAACACTGATGGAAATAAACATTTCAGTGcttcatttcagtaaaaaaagagCAAGGAGGTTGTTAGGTGTTCGTGGTATGCTGAAGACTTCTGACACAAGCAGAAAGTGATACATCAACACCGTATCAACTGGGATTAAGGTTGGATGAAGAGTGACAAACTCTGATTATGCTGCATTTTCTTGTACCTGAAGAGCAAAACTAAAACAGGTCCAGGTCCTCACTGACAGCAGCCTCATTCTGCTGGATGTACTTTAGGATGTCTAGCTGATCCATTGCCTGGGCAGAGTCTGGCTGAGGAGGAGCTGCACTGGTTGGTGCCAGGGAAGAAGGCTTCTGGGGAACAGCTGGCTTGGCCTTCACAGCTGGTTTAGCCTTCACAGCTGGTTTGGGTTTCATGGCTGGTTTGGGTTTGGGTGTGATGTCTGGCTTTGGTTTGATAGGTTTACTGATCGCTAGAAGTTTGTCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113968 True 1566 lncRNA 0.35 2 30070957 30072897

Neighbor

gene id symbol gene type direction distance location
LOC103038716 LOC108423492,LOC103383742,LOC108269470,LOC108270315 coding upstream 62029 29989786 ~ 30008928 (+)
odc1 odc1,LOC107753348,LOC107687839 coding upstream 217692 29847628 ~ 29853265 (+)
nol10 nol10 coding upstream 255043 29786026 ~ 29815914 (+)
LOC103027650 pdia6,LOC105893145,LOC106607563 coding upstream 304535 29757827 ~ 29766422 (+)
LOC103028385 LOC103028385 coding upstream 333681 29734613 ~ 29737276 (+)
pask LOC107557849 coding downstream 75362 30148259 ~ 30173142 (+)
mterf4 NA coding downstream 100689 30173586 ~ 30179026 (+)
LOC103030290 NA coding downstream 108023 30180920 ~ 30184812 (+)
LOC103031974 NA coding downstream 116164 30189061 ~ 30190170 (+)
LOC103029649 klhl24,LOC107659963,LOC107721788,LOC107663692,LOC107721905 coding downstream 123820 30196717 ~ 30238525 (+)
G84597 NA non-coding upstream 109745 29959375 ~ 29961212 (+)
G84591 NA non-coding upstream 138567 29931960 ~ 29932390 (+)
G84558 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378 non-coding upstream 206123 29859460 ~ 29864834 (+)
G84535 NA non-coding upstream 324017 29746627 ~ 29746940 (+)
G84534 NA non-coding upstream 328470 29742027 ~ 29742487 (+)
G84685 NA non-coding downstream 112986 30185883 ~ 30243942 (+)
G84691 NA non-coding downstream 146241 30219138 ~ 30224378 (+)
G84692 NA non-coding downstream 174559 30247456 ~ 30248237 (+)
G84693 NA non-coding downstream 176129 30249026 ~ 30249482 (+)
G84694 NA non-coding downstream 176645 30249542 ~ 30249865 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 55777 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 992059 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1027218 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1029350 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 1045843 28999502 ~ 29025114 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 533860 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 1382087 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 1676806 31749703 ~ 31805403 (+)
G85189 NA other downstream 1750689 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 2126286 32199183 ~ 32218762 (+)

Expression


Co-expression Network