G84804


Basic Information

Item Value
gene id G84804
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30580056 ~ 30589023 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114204
gcttcataaAACGACGCTCCATTGTTGAAAAATATTAAGGTTTCATGCACAACAAACCATAATCaactttctttttaaaagaatggtacaaaaaaaacatagccaTTATGTTCAGAACTCGCCAAATAACCACGTTATTTGAGGATACTCGTAAACAGTGCagtagtagagtagtagagTCTAAAATcgccatttttttcttttccccctAACAAATTCATTGACGAAGCTCAAGTCACAGTATACGATTTCTCAGTAAATAGTAGTATAACATTGATGTGTGCAAAGAAATCTGAAGCACATTCAGTAAGTCCCtttgaaagaaaggaaagaaaaaaagagcgaGAAAAAGTCCTCTCGTCCCGTTCTGGGGATTCCGTTTCCTTCCCGAGATACAAACAAAACACCAGGTTGCTGATGAGTCGTAagatgatatttttttactagcATAGGCTGAAATTATCTGAAATAAcaagtatttattttagatacaaaaatacaaatatgactttttttctgtttgaaaAATAAAGAAGCGTGCCGGGTGGTGAGGTTCGTAGAGGCACCTGTGTTGGCACCGGAGTAGAAGAAGTGAAGAAGTTCATGCAGAGAgatgaaaaaagaacaaaaaaacaacaaagaactGTCATGTCTTTGCCTTTTTTTCAGAAAGGTAAAATCGTAAAATCTTATGGCCTGAAAGGAATTGGACGTGattgtgtgtgcagtgtgctgATTACGCGCCACTTAGTCTGGAGCCTGGAGTTATACTACTTAGATtagtagtttagtttagcttagtctGGGTAGTAAATCAACTTGATTGAGGACTGTTGAGTAAAACATTGAGGACGTGAGTCTGTATGTGAGTCACCTGCTGGTGAGAGCTTGGATTGGCGCCACGTGGCTGGGCATGCGCTACAGACTAGACTAGGCATGGAGAACATCTGCGAAGGCTGTACATTGTAGACCTTTATTCTAGGAAAGGCCGAATGGAGGCTGGCGATGGACGAAAGTGAGAATAAGAATAGGAAAATacgaataataataagaagaaatacACATTTCTATTCACATTGCACCATCCTCGCGTATAGGCCTGCGTACACTGCATCACGTATCAGTGCGTTCGTTCGCACTGGTCTGAAAGagtgtatgtgtaagtgtgtatgtgtgtatatatatatatgtatatatatatgtatatgtgtttgtgtgtgtttgtgtgattacAAAAGAGCTCTAGCAGCAGTTGGAATGGTTTTCTACGTTTGATTGAGTAAGGCCGCTCCAGGGCAGCTTGTGTTAGGTCTTTTTCTTGTTTAGAAGCGagtgttgtagtagtagtagtagtagaagtagtagtagtagtaagctACAGGATAAGGACTTTAAAAGGTCTTTAGAGATTCTGTACAACTACGTAATATCGTAAAGCTCGTAAAGTGATGTGCTTCGTCCTCTGCTCGAAAGGTCGGCGCTCTACACGGCGccgatttctttttcttctgattatttttatgttattttcatttttcttggAAGAAGATTGTTCGTGAAGTAATGGcaagtccatccatccatcttgaAATAAATCGAGGGCAGAGGCCTCGGCAGGATGGAACCGTTTCCAGAACCTCAGCCAGACGCTTCAGCCTTAGCCTTCAGAAGCTTCAGCCATGCTTTCAATCAAGGCTTTCGATGTGTACAAAAGCTGACAGTAGCTGGCGAGCCCCCTAAATCCCCTAAATCAATGTCATCAATGTCGTTCTCGCCATCTCCAGTCTTTAGTCTGCCCCCACCCCCTTTTTCCTcttccacctcctcctcctcatcctcctctttTTCCACCTCCAACCACCTTTGTCCGTGCGTCGCAGCCTCCTCCTCTCCCACCGTCGTCCTCCTTCATGCACAGCCGACAAAGTGCTTCGAATCGGTGGTTAAAAAATTGGttcgttgttttttttttgttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114204 True 1978 lncRNA 0.41 3 30580056 30589023

Neighbor

gene id symbol gene type direction distance location
LOC103031349 ece2 coding upstream 16262 30425710 ~ 30563794 (+)
yeats2 yeats2,LOC107578903 coding upstream 252904 30257792 ~ 30327152 (+)
LOC103029649 klhl24,LOC107659963,LOC107721788,LOC107663692,LOC107721905 coding upstream 341531 30196717 ~ 30238525 (+)
LOC103031974 NA coding upstream 389886 30189061 ~ 30190170 (+)
LOC103030290 NA coding upstream 395244 30180920 ~ 30184812 (+)
LOC111193145 NA coding downstream 38824 30627847 ~ 30631632 (+)
LOC103037625 LOC103037625 coding downstream 124581 30713604 ~ 30746863 (+)
rpp40 NA coding downstream 294285 30883308 ~ 30892684 (+)
LOC103044961 NA coding downstream 333946 30922969 ~ 30938428 (+)
znf407 LOC104944474,LOC104948785 coding downstream 353653 30942676 ~ 30991541 (+)
G84803 NA non-coding upstream 10156 30569698 ~ 30569900 (+)
G84795 NA non-coding upstream 66852 30465598 ~ 30513204 (+)
G84730 ncapd2,LOC107730454 non-coding upstream 157602 30414780 ~ 30422454 (+)
G84727 acsm3,LOC108428295 non-coding upstream 164463 30392340 ~ 30415593 (+)
G84729 ncapd2 non-coding upstream 167282 30396477 ~ 30412774 (+)
G84806 NA non-coding downstream 4610 30593633 ~ 30594408 (+)
G84831 NA non-coding downstream 97897 30686920 ~ 30689161 (+)
G84858 NA non-coding downstream 115453 30704476 ~ 30707183 (+)
G84870 pik3cb non-coding downstream 181578 30770601 ~ 30771083 (+)
G84877 NA non-coding downstream 216178 30805201 ~ 30805742 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 564876 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1501158 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1536317 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1538449 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 1554942 28999502 ~ 29025114 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 17734 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 865961 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 1160680 31749703 ~ 31805403 (+)
G85189 NA other downstream 1234563 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1610160 32199183 ~ 32218762 (+)

Expression


Co-expression Network