G84805


Basic Information

Item Value
gene id G84805
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30583155 ~ 30583806 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114205
gtttataagtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtttctgcccGCGGCGCGCGCTCACCTCTCTTGGCTCTTCCTATCTGTCCGAGTTTGGGGGGTCTCTTGGCCTGTCCCGCGCCGAAGAACGCGCTCGTGTCCTGCAGCCCGCAGCTGAAGGACatgataatgatgatagcGCGCGGACTCGCGAGCGGCtggtactgctgctgctgttgctgacAGTGACGGTTACACGCGCGCACCGTATCCTCCGGTCTGAGCGCGCGCGAGAGAAAGAGcctgtgcgtaaaagcgcgtgAAAGAGGGTTCTAGAGAGTCTGGTAGAGCCCCGCTGCTGGTGTTTGAGCTCGCGCTGCTGCTTCTGGTGGTGGTAGTGGAGCTCgtgctgctgctgggttgttgtcTGCTGTCAGTCTGGAGAGGAACAGGATCCGCGGCGCGAGCAGAGCAGAGGAGAGTAGAGGACTGTGCGCGCGCTGCTGctgccggtgtgtgtgtgcgcgtgtgtgtctGCCGTGGGATGTGGGAGATCCCGCGATCATAAAGGGAACCCAGGCGGAGCGGTGAAGTCATCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114205 True 583 lncRNA 0.60 2 30583155 30583806

Neighbor

gene id symbol gene type direction distance location
LOC103031349 ece2 coding upstream 19361 30425710 ~ 30563794 (+)
yeats2 yeats2,LOC107578903 coding upstream 256003 30257792 ~ 30327152 (+)
LOC103029649 klhl24,LOC107659963,LOC107721788,LOC107663692,LOC107721905 coding upstream 344630 30196717 ~ 30238525 (+)
LOC103031974 NA coding upstream 392985 30189061 ~ 30190170 (+)
LOC103030290 NA coding upstream 398343 30180920 ~ 30184812 (+)
LOC111193145 NA coding downstream 44041 30627847 ~ 30631632 (+)
LOC103037625 LOC103037625 coding downstream 129798 30713604 ~ 30746863 (+)
rpp40 NA coding downstream 299502 30883308 ~ 30892684 (+)
LOC103044961 NA coding downstream 339163 30922969 ~ 30938428 (+)
znf407 LOC104944474,LOC104948785 coding downstream 358870 30942676 ~ 30991541 (+)
G84803 NA non-coding upstream 13255 30569698 ~ 30569900 (+)
G84795 NA non-coding upstream 69951 30465598 ~ 30513204 (+)
G84730 ncapd2,LOC107730454 non-coding upstream 160701 30414780 ~ 30422454 (+)
G84727 acsm3,LOC108428295 non-coding upstream 167562 30392340 ~ 30415593 (+)
G84806 NA non-coding downstream 9827 30593633 ~ 30594408 (+)
G84831 NA non-coding downstream 103114 30686920 ~ 30689161 (+)
G84858 NA non-coding downstream 120670 30704476 ~ 30707183 (+)
G84870 pik3cb non-coding downstream 186795 30770601 ~ 30771083 (+)
G84877 NA non-coding downstream 221395 30805201 ~ 30805742 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 567975 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1504257 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1539416 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1541548 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 1558041 28999502 ~ 29025114 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 22951 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 871178 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 1165897 31749703 ~ 31805403 (+)
G85189 NA other downstream 1239780 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1615377 32199183 ~ 32218762 (+)

Expression


Co-expression Network