G84806


Basic Information

Item Value
gene id G84806
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30593633 ~ 30594408 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114207
CCACATTCTCACACATCAATTAGAAAATTAAACAcagcaaaagaaaaacacaagcaGCTGTGAGCAAAAAAACTTTATTGCCTTAACGAAAGAAAAGCAGCATTATCaaacgtatttatttattcagaagCTCCTTAGGAGCCCCTGAGATAACAGACTTCAAACTGTaataatactgaatactgagttACACACACATGGCTCTCTcagcattcatttacatattaaGGCACTGAGCTAGAAATAAAGATGCTTCCATTCACATCAATATTAACAAGCATTTAATGATTTTCATTCATTCAACTCACCAGTTCATTAACaagtaatgtgtgtgtttaatacatgtaTCATACTGCCAACTTTTCACCAAttcataaaataaagtaatgttcCGTTCCTAATTTTAGTCCGGGAGAGTATTTATAGAGGCACAGCACTGCAGAGAATGATAAAAGGTAAACCTAAACAAATTTAACGCAAACACCGATCTCATACCAAAGTAGCTTACTGAACTTTAATCAGTGTaccagtttttttattacactgtCTAGTATTTTCACAAGCCCTAGCACGGCTGTTTAAACTTATATTAAGTTTTTAGAGTAAGTAAGTTTATAGAGTACCAGGTACCAAGATAAAGAGCCACTAGTTCACAGCTTAAATCTCTTTCTGACACACTAAATGTTAAACGATTTTAAAAGAATAGTGTGAggaaaaatgtccaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114207 True 729 lncRNA 0.33 2 30593633 30594408

Neighbor

gene id symbol gene type direction distance location
LOC103031349 ece2 coding upstream 29839 30425710 ~ 30563794 (+)
yeats2 yeats2,LOC107578903 coding upstream 266481 30257792 ~ 30327152 (+)
LOC103029649 klhl24,LOC107659963,LOC107721788,LOC107663692,LOC107721905 coding upstream 355108 30196717 ~ 30238525 (+)
LOC103031974 NA coding upstream 403463 30189061 ~ 30190170 (+)
LOC103030290 NA coding upstream 408821 30180920 ~ 30184812 (+)
LOC111193145 NA coding downstream 33439 30627847 ~ 30631632 (+)
LOC103037625 LOC103037625 coding downstream 119196 30713604 ~ 30746863 (+)
rpp40 NA coding downstream 288900 30883308 ~ 30892684 (+)
LOC103044961 NA coding downstream 328561 30922969 ~ 30938428 (+)
znf407 LOC104944474,LOC104948785 coding downstream 348268 30942676 ~ 30991541 (+)
G84804 NA non-coding upstream 4610 30580056 ~ 30589023 (+)
G84805 NA non-coding upstream 9827 30583155 ~ 30583806 (+)
G84803 NA non-coding upstream 23733 30569698 ~ 30569900 (+)
G84795 NA non-coding upstream 80429 30465598 ~ 30513204 (+)
G84730 ncapd2,LOC107730454 non-coding upstream 171179 30414780 ~ 30422454 (+)
G84831 NA non-coding downstream 92512 30686920 ~ 30689161 (+)
G84858 NA non-coding downstream 110068 30704476 ~ 30707183 (+)
G84870 pik3cb non-coding downstream 176193 30770601 ~ 30771083 (+)
G84877 NA non-coding downstream 210793 30805201 ~ 30805742 (+)
G84906 NA non-coding downstream 303511 30897919 ~ 30899179 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 578453 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1514735 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1549894 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1552026 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 1568519 28999502 ~ 29025114 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 12349 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 860576 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 1155295 31749703 ~ 31805403 (+)
G85189 NA other downstream 1229178 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1604775 32199183 ~ 32218762 (+)

Expression


Co-expression Network