alg3 (alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115)


Basic Information

Item Value
gene id alg3
gene name alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30606757 ~ 30615062 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114230
CAGATTATAACAGTGCTGTTTACCTCCAACTTCATCGGCATGTGTTTCTGTCGCTCGCTGCACTACCAGTTCTACGTCTGGTATTTCCACACCCTGCCTTACCTGCTTTGGAGTGGCGGGGTGAAGAAGCTCGCCCACCTGCTCAgggTGTTGATACTGGGTCTAATAGAGCTTTCATGGAACACGTACCCCTCCACCAACTACAGCTCTATATCTCTGCATGTCTGCCATCTCATCATCCTGCTTTGTCTGTGGTTTAACCCCAACCCAACACCTCAAACAGAGTCCCAAAACAAAGCCAAACGCCAATGAGCACTGTCCAGCCTGAGCCCTCCCTATACTGTACATCCTGGGCTCTCTATGTCCAACTCCATGTCTGCTCCTACCTGCATTGATGCCACTGCTCTGGACAGACGTGATCCTGCAGGGGGTTCAGCCTGTGACGTCCAGGTTGTCCTAGTGAGCGGCGATGCTGGTTCAGTTGCCAGTGGGAAAGTGCCAGATCTGTGGTGGGGAAAAAACAAAGCTTCTCAGATTTTAAAAGGATAAAAGTGCTGAAGGACTGCTTAAGTCTTGTACTTAAATGGAAAAATGTGAACATATTGTTTTCTCCTGAACATGAACTAGGCCTAGCTGTGGGCTAAATCAAAATGTCAATTGTGATTAACtgataaaaaatgcttttattatcAATGCAGCAGTATGACAATCTCATTATGCAGCTATTATTATGCTTAT
>TU114231
CAGATTATAACAGTGCTGTTTACCTCCAACTTCATCGGCATGTGTTTCTGTCGCTCGCTGCACTACCAGTTCTACGTCTGGTATTTCCACACCCTGCCTTACCTGCTTTGGAGTGGCGGGGTGAAGAAGCTCGCCCACCTGCTCAgggTGTTGATACTGGGTCTAATAGAGCTTTCATGGAACACGTACCCCTCCACCAACTACAGCTCTATATCTCTGCATGTCTGCCATCTCATCATCCTGCTTTGTCTGTGGTTTAACCCCAACCCAACACCTCAAACAGAGTCCCAAAACAAAGCCAAACGCCAATGAGCACTGTCCAGCCTGAGCCCTCCCTATACTGTACATCCTGGGCTCTCTATGTCCAACTCCATGTCTGCTCCTACCTGCATTGATGCCACTGCTCTGGACAGACGTGATCCTGCAGGGGGTTCAGCCTGTGACGTCCAGGTTGTCCTAGTGAGCGGCGATGCTGGTTCAGTTGCCAGTGGGAAAGTGCCAGATCTGTGGTGGGGAAAAAACAAAGCTTCTCAGATTTTAAAAGGATAAAAGTGCTGAAGGACTGCTTAAGTCTTGTACTTAAATGGAAAAATGTGAACATATTGTTTTCTCCTGAACATGAACTAGGCCTAGCTGTGGGCTAAATCAAAATGTCAATTGTGATTAACtgataaaaaatgcttttattatcAATGCAGCAGTATGACAATCTCATTATGCAGCTATTATTATGCTTATCCAGTTTTTTACACATCAGCCgacattaaaactacatttgTCTGcgttagcattttatttttcacagagtTTCAAATGcagtaaatcaaataaaatgcaaaaatactctatggacaaaagtattgggacacctgcttatttccAGAAATCAAGGGAGTTCAAAAAGTGTTCTTGTTGAAGTTACTGCAGACCTgccaacatgttttttttgggggtttttttCGTAACAGTTATGCATTTTGATCTTCTAGTACGCTTGTAGGATTCCATGTTCTAAAGTATGCATATCGTTAATTTAGGCTTTGTCCACACAAATCCTagcacaagttttttttatctctgttttgGCCTTCCTCCATTTGAAAATATAATTTTCATTCACCAAAAACGGTGTTTTTTCGAAAACGCCTTCCAAGGTGGAGATTTTTGAGAACTCTGCTACTAGCGGAGTCATGTTGACGGGCAAAACAAAGCCTTTTGAAAACGCCTATTCTGAATGAGCCTGAAACATGAACAGCGATTGGATTGATTCTTTCTCTCTGCAATTTGCAGATTAAAAGCATGTTTACAGCTTATTTTAATGTTACTCTTATGTTACCCAACACAGCAGAGTCACCAAAATGTGCTGCGTGCGTTTTTTTCCGATCCTCCTGTTCTAGAGGTACAAACCTTACAGCGAACAGAAGTTCTGGACCAGGCCTGGACCAACAAGCACCTGGTGGAACAATTTTGAAAATGATATTGTTGTTACTGAGAAGTGGCCAGAAAACTTGCTGGTGtggacaaatatatttttaaaaacgagACAAAATATTCGGATTCATGGGGACAAGGCTTAAGTCAGGTTTTCACTAAAGTTGATTCCACCACTGAGCTACAAAGAGAGATCTCTGCGTAAGCTGATCTCTCCCATAGGATTCCTGTTGTGCAGTGTCTGTTGCATCCATTAATTACAGCTGCTGCTACAGCTCTGTAAATGGTTTAAAGCTGTAGACCAGGGATTTAGTCCTGGATTGActaaataaagaacattttagagaa
>XM_007231619.2
GTCAGTGAATATGAGTagaggagctgctgctgccacgCTGAGCTCTACTGAGctgttcctcctcctccagcagcagcggTAGCAGCGGGGACAGTAATGGcaggagggaggaagagaggagcCGCCGCTCCGGCCGGGCTGTCCGCTACTCTGGGCTCGGTGTGGAGAGATAAACACCTGGTGCTGTTTAAGGCGGAGTACACCGGCCTGGTGGCGGCGGTGCTGTGGGTCCTGGAGATAGCCATCAACCTGTGGGTCATTCAGAAAGTAGCGTatacGGAGATTGATTGGAAAGCCTATATGGATGAGGTGGAGGGAGTAATAAACGGTACCTATGACTACACCGAGTTGAAGGGAGACACAGGACCTTTGGTGTACCCAGCAGGCTTTGTGTACATATTCACAGCGCTTTATTACATTACGGACCGTGGGCTGAATATCAGGCTGGGTCAGTATGTGTTTGCTGTATTCTACCTCATCACCCTACTGCTGGTCTTCCGCATCTACCACCGTACCAAAAAGGTTCCACcgtatgttttcttttttgtgtgttgtgcATCCTATCGGATCCACTCCATCTTTGTGCTCCGCCTCTTTAATGACCCTGTGGCCATGATGCTACTGTTTGGAGCAGTCAACCTCTTCTTAGATGCACACTGGACATTGGGCTGCGCTCTCTACAGTCTAGCTGTGTCTGTGAAGATGAACGTGATGCTCTTCGCTCCAggactcctcttcctcctcctctcagagTTTGGACTGATAAAGACTCTGCCCCGGCTGATGCTGTGTGCTGTCATCCAGcttTTGCTTGGTTTGCCCTTCCTCTTAGTGAACCCAGTAGGTTACATGAGCCGCGCATTTGACCTGGGTCGCCAATTCCTGTTTAAGTGGACCGTAAACTGGCGCTTCCTACCAGAGGAGATTTTCCTCAGCAGGTATTTTCATCTGGCCCTGCTGCTCGCTCATCTTACCACACTTGTCTTCTTTGCTCTGAGGAGATGGAAGAGGCCTGGGAGCAGCATTTGGGCTCTTTTGAAAGAACCATCTGAAAGAAAGGAGACTGCACAGAAGCTCAACTCTGATCAGATTATAACAGTGCTGTTTACCTCCAACTTCATCGGCATGTGTTTCTGTCGCTCGCTGCACTACCAGTTCTACGTCTGGTATTTCCACACCCTGCCTTACCTGCTTTGGAGTGGCGGGGTGAAGAAGCTCGCCCACCTGCTCAgggTGTTGATACTGGGTCTAATAGAGCTTTCATGGAACACGTACCCCTCCACCAACTACAGCTCTATATCTCTGCATGTCTGCCATCTCATCATCCTGCTTTGTCTGTGGTTTAACCCCAACCCAACACCTCAAACAGAGTCCCAAAACAAAGCCAAACGCCAATGAGCACTGTCCAGCCTGAGCCCTCCCTATACTGTACATCCTGGGCTCTCTATGTCCAACTCCATGTCTGCTCCTACCTGCATTGATGCCACTGCTCTGGACAGACGTGATCCTGCAGGGGGTTCAGCCTGTGACGTCCAGGTTGTCCTAGTGAGCGGCGATGCTGGTTCAGTTGCCAGTGGGAAAGTGCCAGATCTGTGGTGGGGAAAAAACAAAGCTTCTCAGATTTTAAAAGGATAAAAGTGCTGAAGGACTGCTTAAGTCTTGTACTTAAATGGAAAAATGTGAACATATTGTTTTCTCCTGAACATGAACTAGGCCTAGCTGTGGGCTAAATCAAAATGTCAATTGTGATTAACtgataaaaaatgcttttattatcAATGCAGCAGTATGACAATCTCATTATGCAGCTATTATTATGCTTATCCAGTTTTTTACACATCAGCCgacattaaaactacatttgTCTGcgttagcattttatttttcacagagtTTCAAATGcagtaaatcaaataaaatgcaaaaatactctatggacaaaagtattgggacacctgcttatttccAGAAATCAAGGGAGTTCAAAAAGTGTTCTTGTTGAAGTTACTGCAGACCTgccaacatgttttttttgggggtttttttCGTAACAGTTATGCATTTTGATCTTCTAGTACGCTTGTAGGATTCCATGTTCTAAAGTATGCATATCGTTAATTTAGGCTTTGTCCACACAAATCCTagcacaagttttttttatctctgttttgGCCTTCCTCCATTTGAAAATATAATTTTCATTCACCAAAAACGGTGTTTTTTCGAAAACGCCTTCCAAGGTGGAGATTTTTGAGAACTCTGCTACTAGCGGAGTCATGTTGACGGGCAAAACAAAGCCTTTTGAAAACGCCTATTCTGAATGAGCCTGAAACATGAACAGCGATTGGATTGATTCTTTCTCTCTGCAATTTGCAGATTAAAAGCATGTTTACAGCTTATTTTAATGTTACTCTTATGTTACCCAACACAGCAGAGTCACCAAAATGTGCTGCGTGCGTTTTTTTCCGATCCTCCTGTTCTAGAGGTACAAACCTTACAGCGAACAGAAGTTCTGGACCAGGCCTGGACCAACAAGCACCTGGTGGAACAATTTTGAAAATGATATTGTTGTTACTGAGAAGTGGCCAGAAAACTTGCTGGTGtggacaaatatatttttaaaaacgagACAAAATATTCGGATTCATGGGGACAAGGCTTAAGTCAGGTTTTCACTAAAGTTGATTCCACCACTGAGCTACAAAGAGAGATCTCTGCGTAAGCTGATCTCTCCCATAGGATTCCTGTTGTGCAGTGTCTGTTGCATCCATTAATTACAGCTGCTGCTACAGCTCTGTAAATGGTTTAAAGCTGTAGACCAGGGATTTAGTCCTGGATTGActaaataaagaacattttagagaagataaaaaa

Function

symbol description
alg3 Predicted to enable dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity and glucosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to act upstream of or within protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Id. Orthologous to human ALG3 (ALG3 alpha-1,3- mannosyltransferase).

NR:

description
dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase-like isoform X1

GO:

id name namespace
GO:0006487 protein N-linked glycosylation biological_process
GO:0097502 mannosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046527 glucosyltransferase activity molecular_function
GO:0000030 mannosyltransferase activity molecular_function

KEGG:

id description
K03845 ALG3; alpha-1,3-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU114230 False 738 lncRNA 0.46 2 30612058 30614012
TU114231 False 1779 lncRNA 0.42 2 30612058 30615053
XM_007231619.2 True 2874 mRNA 0.45 10 30606757 30615062

Neighbor

gene id symbol gene type direction distance location
LOC103031349 ece2 coding upstream 42963 30425710 ~ 30563794 (+)
yeats2 yeats2,LOC107578903 coding upstream 279605 30257792 ~ 30327152 (+)
LOC103029649 klhl24,LOC107659963,LOC107721788,LOC107663692,LOC107721905 coding upstream 368232 30196717 ~ 30238525 (+)
LOC103031974 NA coding upstream 416587 30189061 ~ 30190170 (+)
LOC103030290 NA coding upstream 421945 30180920 ~ 30184812 (+)
LOC111193145 NA coding downstream 12785 30627847 ~ 30631632 (+)
LOC103037625 LOC103037625 coding downstream 98542 30713604 ~ 30746863 (+)
rpp40 NA coding downstream 268246 30883308 ~ 30892684 (+)
LOC103044961 NA coding downstream 307907 30922969 ~ 30938428 (+)
znf407 LOC104944474,LOC104948785 coding downstream 327614 30942676 ~ 30991541 (+)
G84806 NA non-coding upstream 12349 30593633 ~ 30594408 (+)
G84804 NA non-coding upstream 17734 30580056 ~ 30589023 (+)
G84805 NA non-coding upstream 22951 30583155 ~ 30583806 (+)
G84803 NA non-coding upstream 36857 30569698 ~ 30569900 (+)
G84795 NA non-coding upstream 93553 30465598 ~ 30513204 (+)
G84831 NA non-coding downstream 71858 30686920 ~ 30689161 (+)
G84858 NA non-coding downstream 89414 30704476 ~ 30707183 (+)
G84870 pik3cb non-coding downstream 155539 30770601 ~ 30771083 (+)
G84877 NA non-coding downstream 190139 30805201 ~ 30805742 (+)
G84906 NA non-coding downstream 282857 30897919 ~ 30899179 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 591577 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1527859 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1563018 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1565150 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 1581643 28999502 ~ 29025114 (+)
pnisr pnisr,LOC102782257 other downstream 839922 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 1134641 31749703 ~ 31805403 (+)
G85189 NA other downstream 1208524 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1584121 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 1821155 32436217 ~ 32441318 (+)

Expression


Co-expression Network