G84831


Basic Information

Item Value
gene id G84831
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30686920 ~ 30689161 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114245
TGAgaatttccatatatatatatatttttttttttttatttaatttatataaaaatgattttctatGATAATGAAAACAATTGATCCATACAGTACTACCTATTTGCTTTACACACAATATCAGAGTTTTTGTGAATTaagtactgattttaaaaattgTCATGGACATGTTGCATGCAGCTTCATGAGAATCATCCATAACACCGATTAAGCAGCTTATAAAGCCAGACCTTGTAACAAGTGGGAACACGTAATTAGGTCGACACATGTCAATTGGGATCGGCCTATACTGGAGTGTGAGGAAGGGCAAGAGGAAATGCTGGAAACCAACCAGTCTTGGGGATGACTTTATTgcaatgatgtcacttcctcctTTGATAGAGTTCGAATTATTGGTCGCCTGGTGGCAGAGGGACCGTGGGAGAATTTTTCCTGTCAAAAATTGGTTGGAAGGCTGCCAGAACAGGTTTTCGCTCCCACCGTTAGTAAAATGTTCACTCACATGTTGATCAAGGGTTGAACATATGTAAATACATGATTTGGAGGAATTACGGTTTGTCGACGTATCTGTTTGATACGTCGAAAGGGGGAATTGTGGGAAATCTTACGAAGAAACCCTGTTTTTACCTTGAATGTATTGACAAACATCTCACAatcatgattacttatcttggtatctaaaattacataatcatcgtgtgaaaccttgtattttatatgcattaaccaatacttacattatatttgatcatttttactcacagtgtattttacacgcatttatataaaagattaatcaataatcacaatatatcctttacacatatagtaaaacattgtttgatcaggcaaattatgacaaattaaccaaCATGATATATAAGGCGTATATTAACACATAGGATCTATtatatggcggactaaccacACGCTGCTAACACAGTAACAAATAACATATAGAACCAATTGTTGGGCACATACAGCTTATGCCTGAAGCATTTAGTTTACTGCATGTTTCTGACTGACAATCAATCATCAGCCAAGTGCACTTTGTACGAACTGAATTGATACAAAAGAGACTTGGGTACGAACAGTGCAGCCTTACACTCTGTGTGTGCGTTGTTTTTCATCTCCCAAAGCGGGATGGGAGCACGCACATGGGGAGGACGACACTTTGTAATTATTAAGACAATGCCACACTGTCCGATTGGAGACAGTCAAGGTCAAACACTGGTGGTGTGATCAAACCTGGGAAACTTCAGTGCTAACAcgtgcatgctaacatgagatgattttaacaaCGCCTCATCAACAGGCTTTACGTCATTTTGGGGTATAAACGTGGAGTCAGATCAgaaggggggtcagaacttttaCTGAGACGGCTGTTGTTAACTGTCTGTTTGTAAcgttctcctgaattcagtaataaatacttgttttgctTCTAACTTCACTCCATCTGTCTAGACTCCTCTATTCAACGAACGCGTAAGGGAGTTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114245 True 1506 lncRNA 0.38 2 30686920 30689161

Neighbor

gene id symbol gene type direction distance location
LOC111193145 NA coding upstream 55288 30627847 ~ 30631632 (+)
LOC103031349 ece2 coding upstream 123126 30425710 ~ 30563794 (+)
yeats2 yeats2,LOC107578903 coding upstream 359768 30257792 ~ 30327152 (+)
LOC103029649 klhl24,LOC107659963,LOC107721788,LOC107663692,LOC107721905 coding upstream 448395 30196717 ~ 30238525 (+)
LOC103031974 NA coding upstream 496750 30189061 ~ 30190170 (+)
LOC103037625 LOC103037625 coding downstream 24443 30713604 ~ 30746863 (+)
rpp40 NA coding downstream 194147 30883308 ~ 30892684 (+)
LOC103044961 NA coding downstream 233808 30922969 ~ 30938428 (+)
znf407 LOC104944474,LOC104948785 coding downstream 253515 30942676 ~ 30991541 (+)
tshz1 NA coding downstream 340850 31030011 ~ 31049206 (+)
G84806 NA non-coding upstream 92512 30593633 ~ 30594408 (+)
G84804 NA non-coding upstream 97897 30580056 ~ 30589023 (+)
G84805 NA non-coding upstream 103114 30583155 ~ 30583806 (+)
G84803 NA non-coding upstream 117020 30569698 ~ 30569900 (+)
G84795 NA non-coding upstream 173716 30465598 ~ 30513204 (+)
G84858 NA non-coding downstream 15315 30704476 ~ 30707183 (+)
G84870 pik3cb non-coding downstream 81440 30770601 ~ 30771083 (+)
G84877 NA non-coding downstream 116040 30805201 ~ 30805742 (+)
G84906 NA non-coding downstream 208758 30897919 ~ 30899179 (+)
G84881 LOC103044643,LOC108428349,LOC107585172,LOC107688461,LOC107722553,LOC107680226,LOC107589802,LOC107718075 non-coding downstream 223722 30912883 ~ 30922290 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 71858 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 671740 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1608022 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1643181 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1645313 29040979 ~ 29041607 (+)
pnisr pnisr,LOC102782257 other downstream 765823 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 1060542 31749703 ~ 31805403 (+)
G85189 NA other downstream 1134425 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1510022 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 1747056 32436217 ~ 32441318 (+)

Expression


Co-expression Network