G84870 (pik3cb)


Basic Information

Item Value
gene id G84870
gene name pik3cb
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30770601 ~ 30771083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114297
GCGTGTTCTCCGAACAGGAACTCCAGTTTGCTACTGACTCTCAGTACATAGTCGGCGAGGCTGCCTCCATCTTCCTCCGAGCCGTGAGTGGTCAGCCATTTTCGGAGAGCCTGCTCCGTTAGCTCTGCTACAGTACAGCTCAGCGGCACCCTCAGACTCGCTGTGTCTTGGGATTGGTTGTAGTGCATGGTAATTTTGATGTCGTTCTCGTTCCTCGCATCATAAATCTCATCAATTGGCCCCGGCTCTATCTGAGGAGAGAAGCAGCTCTGAAGCCACTCCCCCCATGAcatcatctgcacacactgcatCTTCTCCTCGCTGTTTCGCTGCATCTTCGAACGGAAATCTTTTACTTCCTGGTCCTGTAGCGCATCCAGCTCATGCAGAC

Function

symbol description
pik3cb Predicted to enable 1-phosphatidylinositol-3-kinase activity and 1-phosphatidylinositol-4-phosphate 3-kinase activity. Predicted to be involved in cell migration; phosphatidylinositol 3-kinase signaling; and phosphatidylinositol-3-phosphate biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be part of phosphatidylinositol 3-kinase complex. Predicted to be active in cytoplasm and plasma membrane. Human ortholog(s) of this gene implicated in glioblastoma; prostate adenocarcinoma; prostate cancer; and type 2 diabetes mellitus. Orthologous to human PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta).

NR:

description
PREDICTED: zinc finger homeobox protein 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114297 True 391 lncRNA 0.53 2 30770601 30771083

Neighbor

gene id symbol gene type direction distance location
LOC103037625 LOC103037625 coding upstream 23738 30713604 ~ 30746863 (+)
LOC111193145 NA coding upstream 138969 30627847 ~ 30631632 (+)
LOC103031349 ece2 coding upstream 206807 30425710 ~ 30563794 (+)
yeats2 yeats2,LOC107578903 coding upstream 443449 30257792 ~ 30327152 (+)
LOC103029649 klhl24,LOC107659963,LOC107721788,LOC107663692,LOC107721905 coding upstream 532076 30196717 ~ 30238525 (+)
rpp40 NA coding downstream 112225 30883308 ~ 30892684 (+)
LOC103044961 NA coding downstream 151886 30922969 ~ 30938428 (+)
znf407 LOC104944474,LOC104948785 coding downstream 171593 30942676 ~ 30991541 (+)
tshz1 NA coding downstream 258928 31030011 ~ 31049206 (+)
znf236 znf236 coding downstream 382526 31153609 ~ 31238682 (+)
G84858 NA non-coding upstream 63418 30704476 ~ 30707183 (+)
G84831 NA non-coding upstream 81440 30686920 ~ 30689161 (+)
G84806 NA non-coding upstream 176193 30593633 ~ 30594408 (+)
G84804 NA non-coding upstream 181578 30580056 ~ 30589023 (+)
G84805 NA non-coding upstream 186795 30583155 ~ 30583806 (+)
G84877 NA non-coding downstream 34118 30805201 ~ 30805742 (+)
G84906 NA non-coding downstream 126836 30897919 ~ 30899179 (+)
G84881 LOC103044643,LOC108428349,LOC107585172,LOC107688461,LOC107722553,LOC107680226,LOC107589802,LOC107718075 non-coding downstream 141800 30912883 ~ 30922290 (+)
G84997 NA non-coding downstream 279327 31050410 ~ 31050652 (+)
G84998 NA non-coding downstream 279744 31050827 ~ 31051026 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 155539 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 755421 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1691703 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1726862 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1728994 29040979 ~ 29041607 (+)
pnisr pnisr,LOC102782257 other downstream 683901 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 978620 31749703 ~ 31805403 (+)
G85189 NA other downstream 1052503 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1428100 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 1665134 32436217 ~ 32441318 (+)

Expression


Co-expression Network