G84877


Basic Information

Item Value
gene id G84877
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30805201 ~ 30805742 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114307
AGTTCATGGTTcaggcttgggcagaacgtgcacgggctccggctggatcgggtcggattttttgcccgatctaagctctattcccttttggtgaagctgttatattaataccattttaacgggcattaaattgttgtttttgtccattattttgttttgttaatatatacatatttcctttgagtgtggcttggtttgtttaatttcatccccagacgcgtttttccgttttttccgtttttttcagtattacaagttttagtaattttctttggttctgtggagaatttcgttttgtttttttgaaattcgttagattatatttttgtcaacattttgggtttattttcgtttgttatttttctaataataataataaatgcataattgatttcctttttttttgacgggcgaataataaaaagtaacgcgatagttacttttactggtaactaattacttttatagtggagtaactccgttagtaactcagttacttttttggagaagtaacgaataactataactaattactttttcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114307 True 542 lncRNA 0.32 1 30805201 30805742

Neighbor

gene id symbol gene type direction distance location
LOC103037625 LOC103037625 coding upstream 58338 30713604 ~ 30746863 (+)
LOC111193145 NA coding upstream 173569 30627847 ~ 30631632 (+)
LOC103031349 ece2 coding upstream 241407 30425710 ~ 30563794 (+)
yeats2 yeats2,LOC107578903 coding upstream 478049 30257792 ~ 30327152 (+)
LOC103029649 klhl24,LOC107659963,LOC107721788,LOC107663692,LOC107721905 coding upstream 566676 30196717 ~ 30238525 (+)
rpp40 NA coding downstream 77566 30883308 ~ 30892684 (+)
LOC103044961 NA coding downstream 117227 30922969 ~ 30938428 (+)
znf407 LOC104944474,LOC104948785 coding downstream 136934 30942676 ~ 30991541 (+)
tshz1 NA coding downstream 224269 31030011 ~ 31049206 (+)
znf236 znf236 coding downstream 347867 31153609 ~ 31238682 (+)
G84870 pik3cb non-coding upstream 34118 30770601 ~ 30771083 (+)
G84858 NA non-coding upstream 98018 30704476 ~ 30707183 (+)
G84831 NA non-coding upstream 116040 30686920 ~ 30689161 (+)
G84806 NA non-coding upstream 210793 30593633 ~ 30594408 (+)
G84804 NA non-coding upstream 216178 30580056 ~ 30589023 (+)
G84906 NA non-coding downstream 92177 30897919 ~ 30899179 (+)
G84881 LOC103044643,LOC108428349,LOC107585172,LOC107688461,LOC107722553,LOC107680226,LOC107589802,LOC107718075 non-coding downstream 107141 30912883 ~ 30922290 (+)
G84997 NA non-coding downstream 244668 31050410 ~ 31050652 (+)
G84998 NA non-coding downstream 245085 31050827 ~ 31051026 (+)
G85020 NA non-coding downstream 437737 31243479 ~ 31259853 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 190139 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 790021 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1726303 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1761462 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1763594 29040979 ~ 29041607 (+)
pnisr pnisr,LOC102782257 other downstream 649242 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 943961 31749703 ~ 31805403 (+)
G85189 NA other downstream 1017844 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1393441 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 1630475 32436217 ~ 32441318 (+)

Expression


Co-expression Network