G84906


Basic Information

Item Value
gene id G84906
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30897919 ~ 30899179 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114354
CTGGCAGTTCAGGCTGAGCCACATTGTCGGAAATTGGATTTTAATACCAcatacttaaaggagaactctgcaGTGAAATGGACTTGGAGTGTAGTGAAATACGAAAACGAATACCGTATTTTACGGACTAGAAGGctacaccggattataaggcgcattttatctgacaatagtaaggaacaggggtgtcgccatgtttaccttctaattctaattcagcaggtctcgccgctggggcaactaagtaaacaaaacaacacagattctcttttgaaaactgtttatttgggtaagtaaagcgcttccttttatttacagtaagcctagatttccagtatttttgcACGATTAGCGCTAGTCGTGGGTACAAGCAGCGTTTAGCGCTAGTAAACACCACCCGACAACTCCACATGTAGGAACACTGAGTGCtgcagtaagccagggtgctatcagctagcggtttgtcccatgtagcttgttttaacacggtaaacaccggctacagtctgatatactcacctctgagcccctaaaattctgaaatacagtgccTTTATCTCCTaataggcttacaatgctagcgatATGGGGTatagtattgctatcttgaaattaagtcacaacTGACGAGCACAAACAAATAGGTAGGAAAACAGAATAGAaagtgacttaatttcaagacgGCTGCACCCTCAGAACTACCTGAATAACCCTCAAAactctaccaatgaagtgtggagctatgCTAAGCTTGTTAAAGCGAGTTGGACTATTTGACAAAAGCTTGAACTTATCATTTTTCACTACAGCCAAAGTTAATTTCACACCAGAAGTGGCCCAATTGGAATCTAAAACATCAGATTCAAAGTGTTGTTTAGTCTGCCACACAAAaagcacatctgtgtcagaTACGATAAGAAAGTTCGGATTTGGATCGTTTTATCTGCTGTTTGAATGCAGCAGAGCACGAGTCAAATCAATGATGTAGCCATTTTCCACAGAactgtttaatatttcaataatcTGAATCAGAACAGTAATAAATGAGGTCAGTGTTGCACAAGTAGTGAAATGtcataaaaatgagaaataaaaaattgagtGGGACATGTATGAATACAcccatacaaaaaaaagatcatatGCATCTACATTTCACAGAGGTAGATATCACagagtcatatatatatatttagttacaataccagtcaaaagtttggacacaccttctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114354 True 1232 lncRNA 0.39 2 30897919 30899179

Neighbor

gene id symbol gene type direction distance location
rpp40 NA coding upstream 5235 30883308 ~ 30892684 (+)
LOC103037625 LOC103037625 coding upstream 151056 30713604 ~ 30746863 (+)
LOC111193145 NA coding upstream 266287 30627847 ~ 30631632 (+)
LOC103031349 ece2 coding upstream 334125 30425710 ~ 30563794 (+)
yeats2 yeats2,LOC107578903 coding upstream 570767 30257792 ~ 30327152 (+)
LOC103044961 NA coding downstream 23790 30922969 ~ 30938428 (+)
znf407 LOC104944474,LOC104948785 coding downstream 43497 30942676 ~ 30991541 (+)
tshz1 NA coding downstream 130832 31030011 ~ 31049206 (+)
znf236 znf236 coding downstream 254430 31153609 ~ 31238682 (+)
LOC103047815 galr1,LOC102797365 coding downstream 490272 31389451 ~ 31410793 (+)
G84877 NA non-coding upstream 92177 30805201 ~ 30805742 (+)
G84870 pik3cb non-coding upstream 126836 30770601 ~ 30771083 (+)
G84858 NA non-coding upstream 190736 30704476 ~ 30707183 (+)
G84831 NA non-coding upstream 208758 30686920 ~ 30689161 (+)
G84806 NA non-coding upstream 303511 30593633 ~ 30594408 (+)
G84881 LOC103044643,LOC108428349,LOC107585172,LOC107688461,LOC107722553,LOC107680226,LOC107589802,LOC107718075 non-coding downstream 13704 30912883 ~ 30922290 (+)
G84997 NA non-coding downstream 151231 31050410 ~ 31050652 (+)
G84998 NA non-coding downstream 151648 31050827 ~ 31051026 (+)
G85020 NA non-coding downstream 344300 31243479 ~ 31259853 (+)
G85021 NA non-coding downstream 348169 31247348 ~ 31253592 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 282857 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 882739 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1819021 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1854180 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1856312 29040979 ~ 29041607 (+)
pnisr pnisr,LOC102782257 other downstream 555805 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 850524 31749703 ~ 31805403 (+)
G85189 NA other downstream 924407 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1300004 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 1537038 32436217 ~ 32441318 (+)

Expression


Co-expression Network