G84997


Basic Information

Item Value
gene id G84997
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31050410 ~ 31050652 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114481
tgggcGTGTTGTTTGGCTGgtgcggctcacagctgctgctctcatagtaacgttactatcagtcggacggtctgtacatcccagctgatcagaggaaaaataaaaaacggaggaaaaaagcctcggacttcagcttatttatccggcgctaatgctcctgactcaaacccctctccttcacatagtcctggtctagaaagtgctcgccactaacccctagcattgcagctaaccggaggattc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114481 True 243 lncRNA 0.50 1 31050410 31050652

Neighbor

gene id symbol gene type direction distance location
tshz1 NA coding upstream 1204 31030011 ~ 31049206 (+)
znf407 LOC104944474,LOC104948785 coding upstream 58869 30942676 ~ 30991541 (+)
LOC103044961 NA coding upstream 111982 30922969 ~ 30938428 (+)
rpp40 NA coding upstream 157726 30883308 ~ 30892684 (+)
LOC103037625 LOC103037625 coding upstream 303547 30713604 ~ 30746863 (+)
znf236 znf236 coding downstream 102957 31153609 ~ 31238682 (+)
LOC103047815 galr1,LOC102797365 coding downstream 338799 31389451 ~ 31410793 (+)
coq3 NA coding downstream 421486 31472138 ~ 31478897 (+)
faxc faxc coding downstream 429980 31480632 ~ 31502591 (+)
fbxl4 fbxl4,LOC107587770,LOC107716847 coding downstream 474299 31524951 ~ 31540915 (+)
G84881 LOC103044643,LOC108428349,LOC107585172,LOC107688461,LOC107722553,LOC107680226,LOC107589802,LOC107718075 non-coding upstream 128120 30912883 ~ 30922290 (+)
G84906 NA non-coding upstream 151231 30897919 ~ 30899179 (+)
G84877 NA non-coding upstream 244668 30805201 ~ 30805742 (+)
G84870 pik3cb non-coding upstream 279327 30770601 ~ 30771083 (+)
G84858 NA non-coding upstream 343227 30704476 ~ 30707183 (+)
G84998 NA non-coding downstream 175 31050827 ~ 31051026 (+)
G85020 NA non-coding downstream 192827 31243479 ~ 31259853 (+)
G85021 NA non-coding downstream 196696 31247348 ~ 31253592 (+)
G85026 NA non-coding downstream 210897 31261549 ~ 31264054 (+)
G85025 NA non-coding downstream 219288 31269940 ~ 31356017 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 435348 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 1035230 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1971512 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 2006671 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 2008803 29040979 ~ 29041607 (+)
pnisr pnisr,LOC102782257 other downstream 404332 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 699051 31749703 ~ 31805403 (+)
G85189 NA other downstream 772934 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1148531 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 1385565 32436217 ~ 32441318 (+)

Expression


Co-expression Network