G85025


Basic Information

Item Value
gene id G85025
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31269940 ~ 31356017 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114516
ACAGTAAGGTAGAAAGTCAGTGATTAAGTCAAATCTTGGACTACActgactttttaaataaaattttaccaTGAAAATTTATTctagacttaatccctgtctggaaaactgtCTGGGAAATGAACACTTAATGTATTCATGAAGTATTTCATcttaatttctattggtccactcaTCATCATGTTCACACATGTTCACACAAGTTGGAAACAACTgcagtcatttttaaaaaacaagaacaaggcTGCTACCAATCAAGATGCTAAACTTACTCCTTTATAAAGTGTCCTGTTCACACACAACCCAACCACAGCACTGCACAGCCTGCACTTAAccctaaacaaacacacacacacaaacacacacacacacacacaccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgatggTTGCGCCTGCATTGAAGCACAAAGATGTTCCGTGCGTGGCTTAGTAGGGCTCAGGAACAGTCGTAAATCATCTTCCACGTTGAGACGGgctctgtatttgttttttaggaATGTAAGTGCAGAAAATCCAGATTCACACAGAAATGTTGATCCAAAGGGGAGGAGTTTTTTCAACGCCATTGAACTCAGTGATGGGAACTCCGTAAACAGGGAAATCCAGAAATCGGGCAGAGAGCGTTCTGTGAACCTCTGTTTCAGGGCTGTGTCTGTGGCCAGATCAATCAGTGACTCTTCTGCTTCAAGAGACAATCCTGCGTTCTTTGCAGAGAAAGGATTCCGTATCCATTCATCTCTTGCTGACACTGCACCGTTTTCAGGAAAGTACTCGCGAAACTGTGTCGTCATTCCATCAAGATGAGCCTGAATGACCACACATATCTCAGCCTTAGCAACTGTGCTGTTGTTCAAAAACTCCTCTAGAGCAGGAAATGCCTCAAAGTTTTCGTTTTCCAGACGAGATTTCCACAAGCACAGTTTTCTGATCCAAGCCTCAAGTTTGTCAGAAAGCGTGAAAACTGATGTGTTTTTCCCCTGCAGTCCTGCATTTAACTCATTGAGCCGTCTGAAAACGTCAGCCAGATAAGCTAACTGTGCAAGCCATTTTTCTTCAGAAACAGCTAGAGGAGAGCCTTTCTCCAATAAAAATGCCCTCACCTCATCGCGGAGCTCGTAAAGGCGACTTAGTACGTTACCCCTGGACAGCCATCGTACCTCGCTATGGTACAGCAGCTGGTGGTGCTCTGATCCCATTTCTTGACAGAGAATTTTGAAAAGTCGTCCACTTGTTGCACTTGCCTTGATGGAATTCACAGCACGAACAGATTCATCCATTACCAGTTTGAGATCAGCGGGCATTCTTTTAGCTGCGAGAGCTTGTCTGTGAATCATACAGTGTGTCCACAATGCAAGCGGGGCAACAGCCCGGACTTTTGTGACTAGCCCACTGTGTTTGCCAGTCATTGCTCGTGCGCCATCTGAGCATATTCCCACACACTTGCTCCAGTTAATGTCATGGTCACGTACGTAAGTATCcagcaaaacaaaaatctgtTCGCCAGTGGCTCGTCCGGGAAGGGggcgacaaaacagaaaatcctCGCCAATTTCATTTTCTTCGACAAATCTGGCATAAACAAGCAATTGTGCCTCTCCAGACACATCTGTAGTTTCATCAAGCTGCAAAGCAAAGTACACACTTGACTTTATCTTGCTGATAACCTGCTCCTCGACATCTTTTGCCATACGGCCAATTCGGTTAGCCACTGTATCATTTGAGACTGGTATTAATGCTAGCTGGTCTGCAGCACTTTTTCCACACATTATTGAAACCGTTTCTTTAGCACACGGTAAGAAAAAAGTCTCACCTAGTGTGTGGGGCTTCCCAGTCTTTGCAATCCAGTGTGATATTACAAAAGAAGCCTTCAGAGCCTTTTGGTTAACAGTTGTGGCTTTTTGGAGTAAAAGTTTCTGGCCTCTTAGCTCCTGCAGTTTACGTTCAAAAAACTCCACAGGTTTTGACTGCAACGCTGAGTGCTTCGTCTGCAAATGGCGTAGCAACTTGGACGGCTTGAGACTTTCCTTGGCTAGCACTTCGCCACAAACCACACACTGCGGCCGTGCATCCTCTCCTTCGCTTGTCTGCGTAAATCCATATTCTATGTACTTTTCGTCATATTTTCTCGCTTTCTTAGTCTTTTTTGAAGTTTCTGGAAGCGGGCGTTTTGCCTCTCCACCTCGACCTTCTAAAAACCGCTCCATTTTAATCCAGCCTGGACTTGCAGAGCCACGGTGCGCATGTGTGAACCTGAATCAAGATTGAGATCGAAGAGTCGAGTACAGCGGCGAATGAGTCAGTTTGAAtcagtgaaaagaaaaaagtgaccTATTTTACGCATGCGGTACCTTGAATCATGAGTTGAATCAATGAGTtgtatttactcttttttttatctacttttagtttGACGCCCAAATCTGATTCGTCGCAAATTTAGCTGAAAAAACGCGACCCCCCTGGAAGTATGTCGCGACCCCCAGGGGGGTCCCGACCCCCAGGTTAAGAACCCCTGATCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114516 True 2590 lncRNA 0.45 2 31269940 31356017

Neighbor

gene id symbol gene type direction distance location
znf236 znf236 coding upstream 31258 31153609 ~ 31238682 (+)
tshz1 NA coding upstream 220734 31030011 ~ 31049206 (+)
znf407 LOC104944474,LOC104948785 coding upstream 278399 30942676 ~ 30991541 (+)
LOC103044961 NA coding upstream 331512 30922969 ~ 30938428 (+)
rpp40 NA coding upstream 377256 30883308 ~ 30892684 (+)
LOC103047815 galr1,LOC102797365 coding downstream 33434 31389451 ~ 31410793 (+)
coq3 NA coding downstream 116121 31472138 ~ 31478897 (+)
faxc faxc coding downstream 124615 31480632 ~ 31502591 (+)
fbxl4 fbxl4,LOC107587770,LOC107716847 coding downstream 168934 31524951 ~ 31540915 (+)
mms22l mms22l coding downstream 356767 31712784 ~ 31759540 (+)
G85026 NA non-coding upstream 5886 31261549 ~ 31264054 (+)
G85020 NA non-coding upstream 10087 31243479 ~ 31259853 (+)
G85021 NA non-coding upstream 16348 31247348 ~ 31253592 (+)
G84998 NA non-coding upstream 218914 31050827 ~ 31051026 (+)
G84997 NA non-coding upstream 219288 31050410 ~ 31050652 (+)
G85036 NA non-coding downstream 16514 31372531 ~ 31378051 (+)
G85052 NA non-coding downstream 151064 31507081 ~ 31508055 (+)
G85054 NA non-coding downstream 187452 31543469 ~ 31544202 (+)
G85277 NA non-coding downstream 618898 31974915 ~ 31975302 (+)
G85282 NA non-coding downstream 642316 31998333 ~ 31998653 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 654878 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 1254760 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 2191042 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 2226201 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 2228333 29040979 ~ 29041607 (+)
pnisr pnisr,LOC102782257 other downstream 98967 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 393686 31749703 ~ 31805403 (+)
G85189 NA other downstream 467569 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 843166 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 1080200 32436217 ~ 32441318 (+)

Expression


Co-expression Network