G85052


Basic Information

Item Value
gene id G85052
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31507081 ~ 31508055 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114550
ccactccaaagggtgatgtcgatcagcactagggcatctgtgagctgatgtatcggaaccgagtcgctgtgctttcctccgagtgcgctgtgatgctactcagcaatgctgcatcagcagcagttcaaaaagagacggtggctggcttcacatgtatcagagaaggcatgtgctagtcttcaccctcctggtgttggggcatttctagtgatgggggatatacagctgagtatcagctgaatgggtgggaaattagaaataaaaatttaaacaaaaaaagataaagtcAAGGCTATATCTGAATGAACCTGAGAACTAAGGTGGACGATGTCTATACCAATAAATTGAACTACTAAGTCCAGAACAAATTGgagtacatacagctctggaaaaaagagaccacctaaaaatgattagtttctttgattttaccaaattgaaaacctctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaaactaaactgcttgaatgtttgcaccaggaataaaggcataaagttatctaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcatgaagactgtgattaaaaccagggttattttaccaaatattgatttctgaactcttaaaactttatgaatatgcacatttctcattttctgcaaataaatggtattaatgacaatacttttatttggaattctgGAGAAataatgtctgtagtttatagaataaaacaacaatgttcattttactcaaacatatacctataaaaaaaacaaaatcagagaaactgattcagaaactgaagtggtctcttaagtaCAAATACTAAACTGGTCCGAGGTGAGTCTTGACTATCAATACTAAACAAATACTAAGTGCAAATAAGTACAAATACTAAATAAGTTCAATACGAGTCTGAGTATAAATACTAAACTAGTTCAAGATGTGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114550 True 975 lncRNA 0.37 1 31507081 31508055

Neighbor

gene id symbol gene type direction distance location
faxc faxc coding upstream 4490 31480632 ~ 31502591 (+)
coq3 NA coding upstream 28184 31472138 ~ 31478897 (+)
LOC103047815 galr1,LOC102797365 coding upstream 96288 31389451 ~ 31410793 (+)
znf236 znf236 coding upstream 268399 31153609 ~ 31238682 (+)
tshz1 NA coding upstream 457875 31030011 ~ 31049206 (+)
fbxl4 fbxl4,LOC107587770,LOC107716847 coding downstream 16896 31524951 ~ 31540915 (+)
mms22l mms22l coding downstream 204729 31712784 ~ 31759540 (+)
rwdd1 rwdd1,LOC107700695,LOC107587776,LOC107552826,LOC107704860 coding downstream 304212 31812267 ~ 31819852 (+)
kpna5 kpna5,LOC107552832,LOC107711738,LOC107716841 coding downstream 327293 31835348 ~ 31849464 (+)
LOC103038892 NA coding downstream 912077 32420132 ~ 32425312 (+)
G85036 NA non-coding upstream 129030 31372531 ~ 31378051 (+)
G85025 NA non-coding upstream 151064 31269940 ~ 31356017 (+)
G85026 NA non-coding upstream 243027 31261549 ~ 31264054 (+)
G85020 NA non-coding upstream 247228 31243479 ~ 31259853 (+)
G85021 NA non-coding upstream 253489 31247348 ~ 31253592 (+)
G85054 NA non-coding downstream 35414 31543469 ~ 31544202 (+)
G85277 NA non-coding downstream 466860 31974915 ~ 31975302 (+)
G85282 NA non-coding downstream 490278 31998333 ~ 31998653 (+)
LOC111193246 NA non-coding downstream 493799 32001854 ~ 32014439 (+)
G85279 NA non-coding downstream 533812 32041867 ~ 32046810 (+)
pnisr pnisr,LOC102782257 other upstream 37525 31454984 ~ 31469556 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 892019 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 1491901 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 2428183 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 2463342 29043217 ~ 29043739 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 241648 31749703 ~ 31805403 (+)
G85189 NA other downstream 315531 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 691128 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 928162 32436217 ~ 32441318 (+)
G85740 zdhhc14 other downstream 3238759 34746814 ~ 34800377 (+)

Expression


Co-expression Network