LOC103034273 (LOC103034273,LOC108415529)


Basic Information

Item Value
gene id LOC103034273
gene name LOC103034273,LOC108415529
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31749703 ~ 31805403 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114703
ttgtaccATAAGACTGAAGACCCAAGTCTGTCTCAcacccagagactcaagactttaCTCAAACTCCCACCAAGACACTCAAGACTACACTAATTCTTGCATCCAGAGAATCAAGACTCAAGTCAGACTTGCAAACAGAGATTTAACACTCAAGTCAGACTCGcttccagagactcaagactcatgTCAATCTTACAACCAGAAGATCAAGATTCAACTCGGACTTGACACCCAGAGATTCAAGACTTATGTTAGACTTGTAACTAGAGGCTTTAAATTGCACTTAGACTTGCACCCAGATACTCAAAACTCAAGTCAGACTCACACccaaagactcaagactcaagtcAGACCCTTACCTAGACACTCAAGACTTGACAGCCAGAGATTCAATACTCAAGTTAGACTTCACACcaagagactcaagacttaagTCAGTCACATCCAGACTCTCAAGACTCAACACAGACTCCCACCTAGACACTCAAGACTTGCACGCAGACACAGAATACTCAAGTCAGGCTCAGACCCAGAGACTTAATACTTGACTTAGACTCGCACCAAGACACTCAAGATATGATTCGGACTCACCTTCGGAGACACAAAACTCACTCCCGGAAACTCAAGTTAGACTCATACCCAAAGACTCAAAACTCAAGTCAGACTCCAACTTAGACACTCACGACTCCACTGAGCCGTGCACCCACATATTCAAGACTCAAATAAAACTCACATCCAGAGACTTAATacttgactctgactcaagTCAGACTCTCACAGACACCAAAGACTTTACTCAGTCCCACACCGAGAGACTCAAGGCTAGACTTGCACACAGACACTAGACTCAAATAAGACTCACACCCATAGACTCAATACTAGAGTCAGACTGTAAGACATAAGACACTTAAAACTCTACTTAGTCTCACACCCAAAACCATAAACCATTATACTGTCCTAAACACAAATTAAAGTACCTCACATAGTGAAGAAACAGCCTCACTAAACCAGACATTTGTCTATACATTTGATTGAACAACAAACATATTTGAGTGGctaaatttgagtaaaatgtgtgttaatcgtgtattctttttttaactgtcacaATGAAATATTCATCTGGTGCTACATGATTATGAAGTGTTATGTACAATACACAGTACAAACTGCAATGCTGAACTATATTTTGCttaaataatatgtatttaatttctGTTTGTCTGCCTTACACACGCAAAAAAGAGCTGCCTTACTCTGTAAGCTTTTTGctgcatattttatatatcGTATCTTTTACACGATCAGGAATACTGCGGTAACCtcagtgtgtgcatgtttatTGCAAAAACAGTGTAAACCTTAAACATATGACTGCTGCCTGATTCCTGTCTGATCATGTAACCCATGCGTCTATCT
>XM_007230948.3
agagagagaggaatatatATGTGGGCAGGAAAGAAGGAGAGGAGTCACAAAGAAGGGAAAACAAAGAAGAGGAAAACAAAGAAGAATGTGAGCAACGACTGGAATATTCTGAAAAGATCTACCACAGTTTACGGGTTACAGCTTACAGAGGTGTGAAGATTGCAGAGACTGTAAAGTGTTGCCCAACACAGTCTCTGAAGAACTCATCTGAGAAGAACTTCACCATAGTTCAGATCTTTCGATGTTTGCCTCTGGCTTAAAGCCTACCATGGATTCCTTCAACACTGTGCTGCGctttctgaccaatcagaagacCACTATCGGCTATGGAGTTATGGCTATTGCCACTATTGGCAGTGAAAGGattttctcactcttttcctTTCAGTGTCCGTGCAATACTCAGCAGAACTTCGCCTATGGGATGACCTACCTCCTCGGACCGGCTTTGGTGCTGCTAACAATAGGGCTGTTCCTTAGTACTAGCCTGTGGCGACTGTACACAGGCTGTTGTCTGAACCCTATGAAGTTGTGCCCCAGGGGAAACTGCATAGGATGTATTTCCATCCTTCTGAGGGTCCTGGTGGGTGCTCTGGTGCCTCCCATCATGTGGCTGAGTGTGGCCCTGCTTAACGGGACCTTCTATGAGTGTGCGGTCAGTGGGTTGGAGGACAAGGTGATCGTCGACCTTTTTTGCAAGCACAGGAACAACACCTGTAAAGAGGAATTGGCCAAGGTGCCATGCAAAACGTCCAACTTGCCCGTGGCCGAGACAACAGAGCTCCTGCTGATGCTCAAAGCGCAGTCCCAGATTCTGGGCTGGGTCATCATTATAACATCGGTTCTGGCTGGGCTGATCGGGACCTGCTACAAAAACTGCCGCTCTCAGGTGAGTTACCTGCAGCTCACCTTCTGGAAGGTCTACatgcagaaagagaaagacaagtTTGACTCATTCGCGGAAGACTACGCCACCAGACTGGCGGAGAGGAACATGAAGAGCTTCTTTGAGAACCAGGACCCGGAAGCCTTTCCTTTCCCTAACCATACGGCCTGGGAGCAGATCTCATCCGTGTACACGTTCAGCAACAGCGAGCAGTACTACAGCACGCTGCAGAAATACGTGGAGGGCCCTAATCGGGATTACAGCTCGGATAAGACGCCGCTGCAAATGGAACACAGCCTGGAGTAGAGACATGTGGGAGAGGCGTGAGTGGGTTGCATTAAAGGACCCAGATCCtacattttctttctattttcccTCCTGATCTCATATATGTACCCTTTTTGTGGGTTCCAAAACCAATTTTTCAAAAAAGGCACAAAGACTTTTTTCTAGGCTCTTTTAAGACCTTTATGACTGATACTTGTTTTGATTGGCTGGCATGTGTCTAAAATGTGATGTAATCTGATGTAGTCTGTTAAATCCTCAGGGATATGGGATATAAAAACAACCTTCAGGCACTTTCACTTTAAATGTTTTCCCTTTATATTCCAGCAGCTCCACTGCAGTCAAATGAAACACAGCACACAGCTGTTCATCATAACCATGATGAATTTGGAATCACTTGTTTTTGCAACATTTTGCTTGCATGTATAGCCCTGGCAGTGGACTATATGTTAAGTGCcaagaaaattaaattttacaagATTCAAGACTCAACTTAAGCCCTTTTTGGATTGGATTTCTCAGATCAGGGCAAAATAACTTGATAGAAGCTTTCATAGTTAACATGCAGATGTGTGTCTCTGATGAGATCTTGTCCAGGACTGCACAGACTGCTTTTGCAAATgttttgcataactttatgtAAGCATGAAACATATCAGATTCTATACCCTTAGCTGTGCACCATTAATAATGCTCTAAAGCAGCACTGACTATAATTTAAGTTATTTGTAGTTAGTTGTTTGTTAGTTGTAACTTTATGAATAGTGCCCACAATGACTTCATGTCTAATGAGTAACATTATCTTTTGATAAGTGTTGTATGACCAGCCATGTCAGTGATTttaacacatgtgaagtcattgTTTTACCAAGGAACAGCATCAACAGAGTTGAATTAACATGTTGTTGTCCATTCTTGCGGCTGTAGGGGTAGATAAGGTTACTAGCACAACCAAAGAAGTTGTAAACATGTCGGCCTCAAGTACTCTAACAACACAAAACACTCGCACACAGAGACTCAAGTCTCAACTCAGGACTTGtacccagagactcaagactcaagtcAGCCTCACAGCCATAGACTTAAGACTCAACTCGGGACTTGTACCCAAAGACTGAAGACCCAAGTCTGTCTCAcacccagagactcaagactttaCTCAAACTCCCACCAAGACACTCAAGACTACACTAATTCTTGCATCCAGAGAATCAAGACTCAAGTCAGACTTGCAAACAGAGATTTAACACTCAAGTCAGACTCGcttccagagactcaagactcatgTCAATCTTACAACCAGAAGATCAAGATTCAACTCGGACTTGACACCCAGAGATTCAAGACTTATGTTAGACTTGTAACTAGAGGCTTTAAATTGCACTTAGACTTGCACCCAGATACTCAAAACTCAAGTCAGACTCACACccaaagactcaagactcaagtcAGACCCTTACCTAGACACTCAAGACTTGACAGCCAGAGATTCAATACTCAAGTTAGACTTCACACcaagagactcaagacttaagTCAGTCACATCCAGACTCTCAAGACTCAACACAGACTCCCACCTAGACACTCAAGACTTGCACGCAGACACAGAATACTCAAGTCAGGCTCAGACCCAGAGACTTAATACTTGACTTAGACTCGCACCAAGACACTCAAGATATGATTCGGACTCACCTTCGGAGACACAAAACTCACTCCCGGAAACTCAAGTTAGACTCATACCCAAAGACTCAAAACTCAAGTCAGACTCCAACTTAGACACTCACGACTCCACTGAGCCGTGCACCCACATATTCAA

Function

NR:

description
protein FAM26E-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114703 False 1419 lncRNA 0.40 2 31749703 31805403
XM_007230948.3 True 2987 mRNA 0.44 2 31801564 31804699

Neighbor

gene id symbol gene type direction distance location
fbxl4 fbxl4,LOC107587770,LOC107716847 coding upstream 208788 31524951 ~ 31540915 (+)
faxc faxc coding upstream 247112 31480632 ~ 31502591 (+)
coq3 NA coding upstream 270806 31472138 ~ 31478897 (+)
LOC103047815 galr1,LOC102797365 coding upstream 338910 31389451 ~ 31410793 (+)
znf236 znf236 coding upstream 511021 31153609 ~ 31238682 (+)
rwdd1 rwdd1,LOC107700695,LOC107587776,LOC107552826,LOC107704860 coding downstream 6864 31812267 ~ 31819852 (+)
kpna5 kpna5,LOC107552832,LOC107711738,LOC107716841 coding downstream 29945 31835348 ~ 31849464 (+)
LOC103038892 NA coding downstream 614729 32420132 ~ 32425312 (+)
LOC103038371 NA coding downstream 621623 32427026 ~ 32430265 (+)
LOC103035585 LOC108423467 coding downstream 923716 32729119 ~ 32923000 (+)
G85054 NA non-coding upstream 205501 31543469 ~ 31544202 (+)
G85052 NA non-coding upstream 241648 31507081 ~ 31508055 (+)
G85036 NA non-coding upstream 371652 31372531 ~ 31378051 (+)
G85025 NA non-coding upstream 393686 31269940 ~ 31356017 (+)
G85026 NA non-coding upstream 485649 31261549 ~ 31264054 (+)
G85277 NA non-coding downstream 169512 31974915 ~ 31975302 (+)
G85282 NA non-coding downstream 192930 31998333 ~ 31998653 (+)
LOC111193246 NA non-coding downstream 196451 32001854 ~ 32014439 (+)
G85279 NA non-coding downstream 236464 32041867 ~ 32046810 (+)
G85304 NA non-coding downstream 279800 32085203 ~ 32085744 (+)
pnisr pnisr,LOC102782257 other upstream 280147 31454984 ~ 31469556 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 1134641 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 1734523 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 2670805 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 2705964 29043217 ~ 29043739 (+)
G85189 NA other downstream 18183 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 393780 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 630814 32436217 ~ 32441318 (+)
G85740 zdhhc14 other downstream 2941411 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 3482812 35288215 ~ 35339832 (+)

Expression


Co-expression Network