G85277


Basic Information

Item Value
gene id G85277
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31974915 ~ 31975302 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114824
GTAGTCGTGCTAGCTGCTCCAGCAAACCGGGCTATGGAGTGGTGTAGCCCACTCTCACCAAGGCAAAGTCAAGCTCTCCGTTCCAGTCACTCCGACCAAAACAGCTCTCCTCGCTCGTCTGCCTTCTCCAGCCAAACTCAGGCACAAGTTAGAACAGATGCTCAATACACTCAGCTCACTAACTTATCTAACTGAAAGTTAGAAAGTTACTCAGAGATACTTATCTAGAACTCTACTGCTCTGCATTAAAAGGTCTAGCAGacactttctgcaaatattaATAGCGTTTTTTCACTCTAAAAGCCTTAGAGAAAAACTAACTTTTCAGCCGTACTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114824 True 337 lncRNA 0.45 2 31974915 31975302

Neighbor

gene id symbol gene type direction distance location
kpna5 kpna5,LOC107552832,LOC107711738,LOC107716841 coding upstream 125451 31835348 ~ 31849464 (+)
rwdd1 rwdd1,LOC107700695,LOC107587776,LOC107552826,LOC107704860 coding upstream 155063 31812267 ~ 31819852 (+)
mms22l mms22l coding upstream 215375 31712784 ~ 31759540 (+)
fbxl4 fbxl4,LOC107587770,LOC107716847 coding upstream 434000 31524951 ~ 31540915 (+)
faxc faxc coding upstream 472324 31480632 ~ 31502591 (+)
LOC103038892 NA coding downstream 444830 32420132 ~ 32425312 (+)
LOC103038371 NA coding downstream 451724 32427026 ~ 32430265 (+)
LOC103035585 LOC108423467 coding downstream 753817 32729119 ~ 32923000 (+)
LOC103035281 NA coding downstream 1067543 33042845 ~ 33057697 (+)
c9h2orf71 NA coding downstream 1085881 33061183 ~ 33071966 (+)
G85054 NA non-coding upstream 430713 31543469 ~ 31544202 (+)
G85052 NA non-coding upstream 466860 31507081 ~ 31508055 (+)
G85036 NA non-coding upstream 596864 31372531 ~ 31378051 (+)
G85025 NA non-coding upstream 618898 31269940 ~ 31356017 (+)
G85026 NA non-coding upstream 710861 31261549 ~ 31264054 (+)
G85282 NA non-coding downstream 23031 31998333 ~ 31998653 (+)
LOC111193246 NA non-coding downstream 26552 32001854 ~ 32014439 (+)
G85279 NA non-coding downstream 66565 32041867 ~ 32046810 (+)
G85304 NA non-coding downstream 109901 32085203 ~ 32085744 (+)
G85310 NA non-coding downstream 153797 32129099 ~ 32129413 (+)
G85189 NA other upstream 150527 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 169512 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 505359 31454984 ~ 31469556 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 1359853 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 1959735 29967550 ~ 30015180 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 223881 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 460915 32436217 ~ 32441318 (+)
G85740 zdhhc14 other downstream 2771512 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 3312913 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 3661508 35636810 ~ 35658087 (+)

Expression


Co-expression Network