G85341


Basic Information

Item Value
gene id G85341
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 32292520 ~ 32292909 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114939
AGCAGGAGGGGGTAGAGTAGCGGGCCGCCAGCCAACGGCGCGGCGCGTGGCAAGCAGATTGCGTCTTCCGTGCACAGCCGACCGGACGTGGGGAGCAGCAGCCGTCAGTAGGAGCGGGAGGCGTCCGACGACAAAGCGGCCAGCAGTAGGAGGTTAGCAACAGGAGGCCAACACGAGACGCCGGTCGGACACACTAGAAGCGAGAACGGGACATAAGCGAGAGAACTGCGGACAACGTCAGGAAGAGCGACCAACAGCGTCTGAAATGCagcaaggtactgaatgagtgatcgttatttaaagcagaagagaaaatctgattggataggtaattaggtgacgtagcattggagtctatagtagaacttacgctgcgctttcatttctGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114939 True 390 lncRNA 0.56 1 32292520 32292909

Neighbor

gene id symbol gene type direction distance location
kpna5 kpna5,LOC107552832,LOC107711738,LOC107716841 coding upstream 443056 31835348 ~ 31849464 (+)
rwdd1 rwdd1,LOC107700695,LOC107587776,LOC107552826,LOC107704860 coding upstream 472668 31812267 ~ 31819852 (+)
mms22l mms22l coding upstream 532980 31712784 ~ 31759540 (+)
fbxl4 fbxl4,LOC107587770,LOC107716847 coding upstream 751605 31524951 ~ 31540915 (+)
faxc faxc coding upstream 789929 31480632 ~ 31502591 (+)
LOC103038892 NA coding downstream 127223 32420132 ~ 32425312 (+)
LOC103038371 NA coding downstream 134117 32427026 ~ 32430265 (+)
LOC103035585 LOC108423467 coding downstream 436210 32729119 ~ 32923000 (+)
LOC103035281 NA coding downstream 749936 33042845 ~ 33057697 (+)
c9h2orf71 NA coding downstream 768274 33061183 ~ 33071966 (+)
G85339 NA non-coding upstream 91 32292022 ~ 32292429 (+)
G85338 NA non-coding upstream 1898 32290380 ~ 32290622 (+)
G85337 NA non-coding upstream 8042 32284140 ~ 32284478 (+)
G85335 NA non-coding upstream 16211 32276045 ~ 32276309 (+)
G85315 NA non-coding upstream 72584 32218864 ~ 32219936 (+)
G85360 akirin1,LOC107700743,LOC107730931,LOC107704951 non-coding downstream 82472 32375381 ~ 32391412 (+)
G85371 NA non-coding downstream 152022 32444931 ~ 32469093 (+)
G85377 NA non-coding downstream 159781 32452690 ~ 32489913 (+)
G85418 NA non-coding downstream 199251 32492160 ~ 32492439 (+)
G85438 NA non-coding downstream 252203 32545112 ~ 32545385 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 73758 32199183 ~ 32218762 (+)
G85189 NA other upstream 468132 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 487117 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 822964 31454984 ~ 31469556 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 1677458 30606757 ~ 30615062 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 143308 32436217 ~ 32441318 (+)
G85740 zdhhc14 other downstream 2453905 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 2995306 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 3343901 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 5191112 37484021 ~ 37503882 (+)

Expression


Co-expression Network