G85371


Basic Information

Item Value
gene id G85371
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 32444931 ~ 32469093 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU114978
AAAAGGTAATTTAAAGCAAAAGCTCAAACACACATAAACCTATTAAACATCCATTGCCTGCACTTGGGTGTGTGTAACACACTGGATATATGAATAGGATCAGTTTGATTATTTCACTGTACATAAAACCCTGAATGCGTATCTACAGTTCTTATCGAGCCATTTGAAGTCTTGCtctgtgtCTATGGCACCGCAGTGCTGAGACAATGGAAGTTGTGGGACTTGCCCTCCCACCCAGTTGGTCCAGGAACCCAAATCACTCCCATCAGACCAAAACCAGAAACCAAAAAGTTGGCTCTGTCCAAGCCCCACCCACAAAGTCCCAGAGATACCCTCCTCCTGAGCTCGTTCTTCACCTCATTGTGGTCAGATTCAGTATGAATGTGCAGCAGACCAGCCCTGTTATCTTTCTTACAGTAGTAAAAAGCGTTCTCCCAGTTCATACGGTCCTCACTGACATGGAGGGAAG
>TU114979
AAAAGGTAATTTAAAGCAAAAGCTCAAACACACATAAACCTATTAAACATCCATTGCCTGCACTTGGGTGTGTGTAACACACTGGATATATGAATAGGATCAGTTTGATTATTTCACTGTACATAAAACCCTGAATGCGTATCTACAGTTCTTATCGAGCCATTTGAAGTCTTGCTCTGTGTCTATGGCACCGCAGTGCTGAGACAGTGGAAGTTGTGGGACTTGCCCTCCCACCCAGTTGGTCCAGGAACCCAAACCACTCCCATCAGACCAAAACCAGAAACCAAAAAGTTGGCTCTGTCCAAGCCCCACCCACAAAGTCCCAGAGATACCCCTCCTCCTGAGCTCGTTCTTCACCTCATTGTGGTCAGATTCAGTATGAATGTGCAGCAGACCAGCCCTGTTATCTTTCTTACAGTAGTAAAAAGCGTTCTCCCAGTTCATACGGTCCTCACTGACATGGAGGGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114978 False 469 lncRNA 0.45 2 32444931 32469093
TU114979 True 470 lncRNA 0.46 2 32444931 32469093

Neighbor

gene id symbol gene type direction distance location
LOC103038371 NA coding upstream 14666 32427026 ~ 32430265 (+)
LOC103038892 NA coding upstream 19619 32420132 ~ 32425312 (+)
kpna5 kpna5,LOC107552832,LOC107711738,LOC107716841 coding upstream 595467 31835348 ~ 31849464 (+)
rwdd1 rwdd1,LOC107700695,LOC107587776,LOC107552826,LOC107704860 coding upstream 625079 31812267 ~ 31819852 (+)
mms22l mms22l coding upstream 685391 31712784 ~ 31759540 (+)
LOC103035585 LOC108423467 coding downstream 260026 32729119 ~ 32923000 (+)
LOC103035281 NA coding downstream 573752 33042845 ~ 33057697 (+)
c9h2orf71 NA coding downstream 592090 33061183 ~ 33071966 (+)
slc4a1ap NA coding downstream 1362177 33831270 ~ 33849509 (+)
babam2 bre,LOC107553730,LOC107656747 coding downstream 1543664 34012757 ~ 34183355 (+)
G85360 akirin1,LOC107700743,LOC107730931,LOC107704951 non-coding upstream 53519 32375381 ~ 32391412 (+)
G85341 NA non-coding upstream 152022 32292520 ~ 32292909 (+)
G85339 NA non-coding upstream 152502 32292022 ~ 32292429 (+)
G85338 NA non-coding upstream 154309 32290380 ~ 32290622 (+)
G85337 NA non-coding upstream 160453 32284140 ~ 32284478 (+)
G85418 NA non-coding downstream 23067 32492160 ~ 32492439 (+)
G85438 NA non-coding downstream 76019 32545112 ~ 32545385 (+)
G85455 NA non-coding downstream 341420 32810513 ~ 32810909 (+)
G85442 NA non-coding downstream 453963 32923056 ~ 32925758 (+)
G85461 clip4,LOC107676112,LOC107731604 non-coding downstream 466145 32935238 ~ 32938633 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 3613 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 226169 32199183 ~ 32218762 (+)
G85189 NA other upstream 620543 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 639528 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 975375 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 2277721 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 2819122 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 3167717 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 5014928 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 5360662 37829755 ~ 37933289 (+)

Expression


Co-expression Network