G85461 (clip4,LOC107676112,LOC107731604)


Basic Information

Item Value
gene id G85461
gene name clip4,LOC107676112,LOC107731604
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 32935238 ~ 32938633 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115094
GCCAGTAGAACGAGAAAAGCAAATTGTCTTACAGTGAAGCTGAatgagaaaaagtaaaaatatctCCTGTCATGTAACTCACTTATTTTAAGAGAAACTATACGTATGTATCTAATTAATTTTAGGATAATTACCCCTTTTCAAGCTTGAGCACAATCTCCTTATCTTTCTTGTTCTACACAAGACCTTCCAGAAGGAAAGGGCATGACAACCGCTCTGATAGAATGGCATCATTATGTCTTCTCTCCTGCTATAACTAACAAAGCTGCTGCAAAAATAACCTTAAAATCTATAATCGTTAACTTTTGCTCTTCCTGTGTAGCTCACATTCTACGAGACGTACAGAAACGATGAGGGTGTTGAACTGTAAAAGCATTAAAGTGCCATTATATGCAATGATATTCTGCCCTCACACACTCAGCGAgatgaaaaataagaataagaataatgaTATTTTATCTAAAGTGCTATGCACCATCATGAAGCATcaagattttaagattttaaatataaagcaaAAACCTTAAAGCTGCAAAGCTGCGTAATATCAATGCTGGGTGCTGCATCACTTTCTGAAACCTGCAGGAACTTGCAGGAACCTGTAGGAACTTTCCACAAGGACAGATTCTGCTTAGAAAAGTCAGTGTAAGAAGTCAAAGGTCCCGTTCACACTGGCTATTAACAAACTTCCTGAGTGATCTGAACACAACTGTTTGCAAAAATGCATAGCTCTGTTCACACCTGATGTTTTAAATGCATATGATTGCTTGCAAATGGATTTCCTACATCATTTATGCTGAACAAGGGGCCAGTTATGGTATGGCTACGTTCAcccagcaggtaaaagtggcccaaatttgATTTTATGACTAAATCTGATGCTTATTTAAAGCTGTTCACACTGTATTTTTATCCATATCTGACACATCTGAACAGTTTGCACCCATAGAAGCAATGCTTCACataaagtttcggtttcattctAGCCAGAATCACAAGAGTTATGTAAAAAGTGCAAATTACTTGGCAACAGCCACGTCTTTAGTTTGTCCTTAGTTTCGTTAAACttcatttttaagatttttatttctctttaatgTTGGTATTAGAAATGCCAAGCAGTTGCAACTTCTAACATCCTATAACtgaatcactcactcactgctgtCATTCATGTCCCTGTCTACACACTTTCAATGTCCCTTCTTCTCACAGTCTTTAATTTACTTCTTCTTGACGTAAAAGTTGCATTAACTCTGACGAGGCTTACCTTGAATCAGATAAAGATGTCAGATTTCAAAACCACATATTGAAGTGTCTAAAATACTTCACACTACCACacaaaatatgcatttttgtCACAATTGAcgtaaaatatcttttttttttttttgcatttgagccacttttacctgctgtgaaATTGCAACCCaagtgttttccttttttttttttttttgcagttctcAGCCCAAATCCAGCTTAGGTAGCTAGTTTGCTTGTGCACCAGCCAGGATTATAATCTTTAACCATTAGCTTGGTGTTGTTGGGCACAACCACACCATCCAACAACTGACTGCATGAGTTAATTAAGATGGGCATGCTATGATAACAAGCTTATGTATAAAGTTTGATACTGTGCACAAACGGATCTTGGATTGGGCTGAGAAAACTGAAAACTGGCAAAGAAAACTTCTACAGTTTGAATGATGTGAGACATCCACAGGAGATGCTTACAGGAGATGTATACAAATTGTCAGGTGTGAACAGCTTTAAGTTTTGGCGCTCATTTGTGATCAGACCAGCCAGGATCCATCATATTAACagcaggtgtgaacagggtCAACATTAAATGCGAGTCACATTTATGGAAAGTCATTGTCTTAAACCGCGTTTActtataatttactttaatttaaagtgCTTAGAAACTGCTACTGATCATGTACTGCAGAATCAGAATCTAACCTCTATCTAAGACCTTTTCAAGAACTTTTCGCTTCAAAATTTAAAGGGAAAGGAACAATTCATCACAAAATAACCTGACATTCATCATCATTTCAACAGAAACATTCATATTAACCAAGAAACAAACGCACAGAAAAAAACGCacctcattacacacactccAGTGCCGACTAATGAccctgtctctttattttttgtgcttCCAAAGTGCTTCACCTCGCACTTTGGCACGTATCCTCAGTCTTTTGTCTCTCCATCAGCGACGCCGCCAATCCCAGCCAGAGAGCTGCTACGAGAATAAAGAAGCTTGATGGAGTGAGAGACAGATGGAATCGGAAAGCCGAGAGCCGATCGAGCCGAGAGCCTCCCGCTTGGAAGATCTCCCGTCTCAGCTGCTTTCGTCCACCAGCTTGGCTCCATTGATGCCTCTGTAGGAGACCCTGCTCGGCCGCACCAGGACGCCGTAGCCAGAGCGGCAGCTGAAGTAGCGGCGCGAGCCAACCGACCCGTCGTTCTTTCCCTTCGCACTGCGCAGCTCCAGGCCCAGCCACAGGCCAGGGGCGAAGTCGGCGGTGCCAAGGTAGCGGATGGTGCCCATCTCGTTGGCGCTGCTGAGCAGGACCTGCATGCCCAGGTGCAGTTTGACGGCGCCGTCCGAGCCAGAGGAGCTGGTGGTCCCTCCCACGCTGCCGGGCCCTCGAGCAGACGCtccagctgagctgagcgaaccCCAGCCAGAACTCGGCGTGCTCCAGCGCCGCCGCACGCCGGACGAATGACTGCTGCACAATCAAGCACATGGCAAGCGAGACGAAACAAG

Function

symbol description
clip4 Predicted to enable microtubule plus-end binding activity. Predicted to be involved in cytoplasmic microtubule organization. Located in intracellular membrane-bounded organelle.

NR:

description
PREDICTED: CAP-Gly domain-containing linker protein 4 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115094 True 2788 lncRNA 0.42 3 32935238 32938633

Neighbor

gene id symbol gene type direction distance location
LOC103035585 LOC108423467 coding upstream 12238 32729119 ~ 32923000 (+)
LOC103038371 NA coding upstream 504973 32427026 ~ 32430265 (+)
LOC103038892 NA coding upstream 509926 32420132 ~ 32425312 (+)
kpna5 kpna5,LOC107552832,LOC107711738,LOC107716841 coding upstream 1085774 31835348 ~ 31849464 (+)
rwdd1 rwdd1,LOC107700695,LOC107587776,LOC107552826,LOC107704860 coding upstream 1115386 31812267 ~ 31819852 (+)
LOC103035281 NA coding downstream 104212 33042845 ~ 33057697 (+)
c9h2orf71 NA coding downstream 122550 33061183 ~ 33071966 (+)
slc4a1ap NA coding downstream 892637 33831270 ~ 33849509 (+)
babam2 bre,LOC107553730,LOC107656747 coding downstream 1074124 34012757 ~ 34183355 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding downstream 1273784 34212417 ~ 34226780 (+)
G85442 NA non-coding upstream 9480 32923056 ~ 32925758 (+)
G85455 NA non-coding upstream 124329 32810513 ~ 32810909 (+)
G85438 NA non-coding upstream 389853 32545112 ~ 32545385 (+)
G85418 NA non-coding upstream 442799 32492160 ~ 32492439 (+)
G85377 NA non-coding upstream 445325 32452690 ~ 32489913 (+)
G85486 NA non-coding downstream 106138 33044771 ~ 33045175 (+)
G85502 NA non-coding downstream 174564 33113197 ~ 33113650 (+)
G85515 NA non-coding downstream 370933 33309566 ~ 33357314 (+)
G85519 NA non-coding downstream 529607 33468240 ~ 33491961 (+)
G85543 NA non-coding downstream 556921 33495554 ~ 33508641 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 493920 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 716476 32199183 ~ 32218762 (+)
G85189 NA other upstream 1110850 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 1129835 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 1465682 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 1808181 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 2349582 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 2698177 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 4545388 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 4891122 37829755 ~ 37933289 (+)

Expression


Co-expression Network