G85553


Basic Information

Item Value
gene id G85553
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 33554368 ~ 33554649 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115207
agcttcctcttacagcgtccacagttaatcctgttggatgtggttgttccttcttggtggtatgctgacattaccctggataccgtggctcttgatacatcacaaagacttgctgtcttggtcacagatgctccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtcacccataatgttgtgtgcattgcaatattttgagcaaaactgtgctcttaccctgctaattgaaccttcacactctgctcttactggtgcaatgtgcaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115207 True 282 lncRNA 0.45 1 33554368 33554649

Neighbor

gene id symbol gene type direction distance location
c9h2orf71 NA coding upstream 482402 33061183 ~ 33071966 (+)
LOC103035281 NA coding upstream 496671 33042845 ~ 33057697 (+)
LOC103035585 LOC108423467 coding upstream 631368 32729119 ~ 32923000 (+)
LOC103038371 NA coding upstream 1124103 32427026 ~ 32430265 (+)
LOC103038892 NA coding upstream 1129056 32420132 ~ 32425312 (+)
slc4a1ap NA coding downstream 276621 33831270 ~ 33849509 (+)
babam2 bre,LOC107553730,LOC107656747 coding downstream 458108 34012757 ~ 34183355 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding downstream 657768 34212417 ~ 34226780 (+)
mocs1 mocs1,LOC107656745 coding downstream 688470 34243119 ~ 34264685 (+)
LOC111193251 NA coding downstream 744074 34298723 ~ 34301134 (+)
G85543 NA non-coding upstream 45727 33495554 ~ 33508641 (+)
G85519 NA non-coding upstream 62407 33468240 ~ 33491961 (+)
G85515 NA non-coding upstream 197054 33309566 ~ 33357314 (+)
G85502 NA non-coding upstream 440718 33113197 ~ 33113650 (+)
G85486 NA non-coding upstream 509193 33044771 ~ 33045175 (+)
G85554 NA non-coding downstream 31005 33585654 ~ 33586291 (+)
G85557 NA non-coding downstream 48933 33603582 ~ 33603786 (+)
G85560 NA non-coding downstream 81591 33636240 ~ 33636573 (+)
G85565 NA non-coding downstream 125124 33679773 ~ 33680017 (+)
G85566 NA non-coding downstream 156949 33711598 ~ 33717379 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 1113050 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 1335606 32199183 ~ 32218762 (+)
G85189 NA other upstream 1729980 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 1748965 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 2084812 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 1192165 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 1733566 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 2082161 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 3929372 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 4275106 37829755 ~ 37933289 (+)

Expression


Co-expression Network