G85566


Basic Information

Item Value
gene id G85566
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 33711598 ~ 33717379 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115221
gtgctgtaggcactTCTTGTCCTTCCACACTGGTCTCCAACGGAGGTTGTCAGcccaacaactacaatacccagaatgcaccacccgctgacaacacacacactgctgatcacgtgacacctcacctgccccggcCGGTTAGCCCTGAGTATTAGCCACTGTATAAAAGCACTGCTCAGACGCCCTTCGGCGCCGCGTATTGCCTAGGTTTCGTCcgacattacaaagcgttattcTCTGTGATTATtttccgtgtatgaccttgcttttgttttttgactaccgatttttgcctttgccttcGTTGTGGATTTTTTCGTGTATtaccctggactgtttatcgtttatGTTTTTCGGATCATCCTTGATACTGCCTGCCTTGTGTATGACCATTGGATTGTTTATcgtttctgtttttggattgcctctgatactgcttACTTCGTGTATGACCACTGGACTGCCTCACTATCCTGTTAAGCTCTCCGCTCCCAGGTATacctttactggtgttttgtttatactgctaatctcattctctgtaccctgtgggtttttaataaaatccttgactggttccgcgagtgtctgtattctgtgctcCACCATGACAC
>TU115222
gtgctgtaggcactTCTTGTCCTTCCACACTGGTCTCCAACGGAGGTTGTCAGcccaacaactacaatacccagaatgcaccacccgctgacaacacacacactgctgatcacgtgacacctcacctgccccggcCGGTTAGCCCTGAGTATTAGCCACTGTATAAAAGCACTGCTCAGACGCCCTTCGGCGCCGCGTATTGCCTAGGTTTCGTCcgacattacaaagcgttattcTCTGTGATTATtttccgtgtatgaccttgcttttgttttttgactaccgatttttgcctttgccttcGTTGTGGATTTTTTCGTGTATtaccctggactgtttatcgtttatGTTTTTCGGATCATCCTTGATACTGCCTGCCTTGTGTATGACCATTGGATTGTTTATcgtttctgtttttggattgcctctgatactgcttACTTCGTGTATGACCACTGGACTGCCTCACTATCCTGTTAAGCTCTCCGCTCCCAGGTATacctttactggtgttttgtttatactgctaatctcattctctgtaccctgtgggtttttaataaaatccttgactggttccgcgagtgtctgtattctgtgctcCACCATGACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115221 True 614 lncRNA 0.46 2 33711598 33717379
TU115222 False 614 lncRNA 0.46 2 33711598 33717379

Neighbor

gene id symbol gene type direction distance location
c9h2orf71 NA coding upstream 639632 33061183 ~ 33071966 (+)
LOC103035281 NA coding upstream 653901 33042845 ~ 33057697 (+)
LOC103035585 LOC108423467 coding upstream 788598 32729119 ~ 32923000 (+)
LOC103038371 NA coding upstream 1281333 32427026 ~ 32430265 (+)
LOC103038892 NA coding upstream 1286286 32420132 ~ 32425312 (+)
slc4a1ap NA coding downstream 113891 33831270 ~ 33849509 (+)
babam2 bre,LOC107553730,LOC107656747 coding downstream 295378 34012757 ~ 34183355 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding downstream 495038 34212417 ~ 34226780 (+)
mocs1 mocs1,LOC107656745 coding downstream 525740 34243119 ~ 34264685 (+)
LOC111193251 NA coding downstream 581344 34298723 ~ 34301134 (+)
G85565 NA non-coding upstream 31581 33679773 ~ 33680017 (+)
G85560 NA non-coding upstream 75025 33636240 ~ 33636573 (+)
G85557 NA non-coding upstream 107812 33603582 ~ 33603786 (+)
G85554 NA non-coding upstream 125307 33585654 ~ 33586291 (+)
G85553 NA non-coding upstream 156949 33554368 ~ 33554649 (+)
G85569 NA non-coding downstream 3344 33720723 ~ 33720960 (+)
G85573 NA non-coding downstream 27573 33744952 ~ 33745471 (+)
G85576 NA non-coding downstream 41154 33758533 ~ 33758760 (+)
G85588 NA non-coding downstream 134809 33852188 ~ 33852388 (+)
G85591 NA non-coding downstream 136938 33854317 ~ 33953373 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 1270280 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 1492836 32199183 ~ 32218762 (+)
G85189 NA other upstream 1887210 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 1906195 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 2242042 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 1029435 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 1570836 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 1919431 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 3766642 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 4112376 37829755 ~ 37933289 (+)

Expression


Co-expression Network