G85588


Basic Information

Item Value
gene id G85588
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 33852188 ~ 33852388 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115247
TACTGGGCCCGGTTTcccaaaatcacaccttgttTATATGCTGAACTCTGGACCACAGTTTGTGACATTGCACTTTTTCTCCATCTGGTTCAGATGATTCCACACTGCAGTGGCTGAAGTCCATGAGATGATGTTCCACAGAGGGTTTATTGTATTTGCGGTAGTCTGCAGTTGGGTGGAGATACATGTGATGTCATAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115247 True 201 lncRNA 0.45 1 33852188 33852388

Neighbor

gene id symbol gene type direction distance location
slc4a1ap NA coding upstream 2679 33831270 ~ 33849509 (+)
c9h2orf71 NA coding upstream 780222 33061183 ~ 33071966 (+)
LOC103035281 NA coding upstream 794491 33042845 ~ 33057697 (+)
LOC103035585 LOC108423467 coding upstream 929188 32729119 ~ 32923000 (+)
LOC103038371 NA coding upstream 1421923 32427026 ~ 32430265 (+)
babam2 bre,LOC107553730,LOC107656747 coding downstream 160369 34012757 ~ 34183355 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding downstream 360029 34212417 ~ 34226780 (+)
mocs1 mocs1,LOC107656745 coding downstream 390731 34243119 ~ 34264685 (+)
LOC111193251 NA coding downstream 446335 34298723 ~ 34301134 (+)
kif6 kif6 coding downstream 641437 34493825 ~ 34633946 (+)
G85576 NA non-coding upstream 93428 33758533 ~ 33758760 (+)
G85573 NA non-coding upstream 106717 33744952 ~ 33745471 (+)
G85569 NA non-coding upstream 131228 33720723 ~ 33720960 (+)
G85566 NA non-coding upstream 134809 33711598 ~ 33717379 (+)
G85565 NA non-coding upstream 172171 33679773 ~ 33680017 (+)
G85591 NA non-coding downstream 1929 33854317 ~ 33953373 (+)
G85596 NA non-coding downstream 38624 33891012 ~ 33891582 (+)
LOC111193250 NA non-coding downstream 73774 33926162 ~ 33929125 (+)
G85602 NA non-coding downstream 93809 33946197 ~ 33949266 (+)
LOC111193252 NA non-coding downstream 419544 34271932 ~ 34319416 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 1410870 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 1633426 32199183 ~ 32218762 (+)
G85189 NA other upstream 2027800 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 2046785 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 2382632 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 894426 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 1435827 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 1784422 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 3631633 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 3977367 37829755 ~ 37933289 (+)

Expression


Co-expression Network