G85591


Basic Information

Item Value
gene id G85591
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 33854317 ~ 33953373 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115250
gaccactttaTGAACAAGCACGTTCTTTTCTTTGAGAAGAAGAAGATCCGCTCCATCTGAGCGCGGTCGGCACGTGGACCGGTGAAATGGACACTGGAAAGAAACGCAGTCTCTTTGTGCTTAAACCTGGAGCTCATTTGCATTGTTCCAAATTGTTGCCAAGGACCGGATCTATGAGTAAGAGCTCGAGGAAGCTgaccaacgtcagacgcatcaAAAGGGTCACAATACCATCGAGAATGACAAGAAGTCCCACTGGAACCAGAGGATGCGTATCCATCCACAACATAATTACTACTAACAGAAAGAATACTGCAGTGGTCATTACTGTGGGAAGCTATGAACCAGCAGTGCGTCTTGCCAGGATGTTGCAGattttaaactattcagtaaaataaaaatgtgatgttTGTTAAAATAGAAGTTGGATGTATGTAATGTCAGTTGATTAAACTTATTCAAAC

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0051205 protein insertion into membrane biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03010 Ribosome
ko00970 Aminoacyl-tRNA biosynthesis
ko04714 Thermogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU115250 True 464 lncRNA 0.42 2 33854317 33953373

Neighbor

gene id symbol gene type direction distance location
slc4a1ap NA coding upstream 4808 33831270 ~ 33849509 (+)
c9h2orf71 NA coding upstream 782351 33061183 ~ 33071966 (+)
LOC103035281 NA coding upstream 796620 33042845 ~ 33057697 (+)
LOC103035585 LOC108423467 coding upstream 931317 32729119 ~ 32923000 (+)
LOC103038371 NA coding upstream 1424052 32427026 ~ 32430265 (+)
babam2 bre,LOC107553730,LOC107656747 coding downstream 59384 34012757 ~ 34183355 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding downstream 259044 34212417 ~ 34226780 (+)
mocs1 mocs1,LOC107656745 coding downstream 289746 34243119 ~ 34264685 (+)
LOC111193251 NA coding downstream 345350 34298723 ~ 34301134 (+)
kif6 kif6 coding downstream 540452 34493825 ~ 34633946 (+)
G85588 NA non-coding upstream 1929 33852188 ~ 33852388 (+)
G85576 NA non-coding upstream 95557 33758533 ~ 33758760 (+)
G85573 NA non-coding upstream 108846 33744952 ~ 33745471 (+)
G85569 NA non-coding upstream 133357 33720723 ~ 33720960 (+)
G85566 NA non-coding upstream 136938 33711598 ~ 33717379 (+)
LOC111193252 NA non-coding downstream 318559 34271932 ~ 34319416 (+)
G85700 NA non-coding downstream 530206 34483579 ~ 34517443 (+)
G85710 NA non-coding downstream 622474 34575847 ~ 34576218 (+)
G85709 NA non-coding downstream 683133 34636506 ~ 34637200 (+)
G85834 NA non-coding downstream 1242543 35195916 ~ 35196276 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 1412999 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 1635555 32199183 ~ 32218762 (+)
G85189 NA other upstream 2029929 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 2048914 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 2384761 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 793441 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 1334842 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 1683437 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 3530648 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 3876382 37829755 ~ 37933289 (+)

Expression


Co-expression Network