G85596


Basic Information

Item Value
gene id G85596
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 33891012 ~ 33891582 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115256
cttaaggccctgtcccactgcgattgcgtctaaatgtccactaaagtacgtccaaatttcagtggacgcagtttagtggatatttagtggatatttagacgcaatctggacgtagtttagtggatatttggacggcaccgtccaagtggacgtagtttagacgttgccgtccactttagacgcaaaagtggttttggtacctcccaaaattttcggaatagacggcgactaatatggacgcaaggaatctgtggtccatggttgtgtagaagagaatagatgtgctctctcttgtagctcaagaagaaatgatgattcactagaaaaaacaaccatatatagttggaagt

Function

GO:

id name namespace
GO:0021532 neural tube patterning biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0021915 neural tube development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0007389 pattern specification process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115256 True 350 lncRNA 0.43 2 33891012 33891582

Neighbor

gene id symbol gene type direction distance location
slc4a1ap NA coding upstream 41503 33831270 ~ 33849509 (+)
c9h2orf71 NA coding upstream 819046 33061183 ~ 33071966 (+)
LOC103035281 NA coding upstream 833315 33042845 ~ 33057697 (+)
LOC103035585 LOC108423467 coding upstream 968012 32729119 ~ 32923000 (+)
LOC103038371 NA coding upstream 1460747 32427026 ~ 32430265 (+)
babam2 bre,LOC107553730,LOC107656747 coding downstream 121175 34012757 ~ 34183355 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding downstream 320835 34212417 ~ 34226780 (+)
mocs1 mocs1,LOC107656745 coding downstream 351537 34243119 ~ 34264685 (+)
LOC111193251 NA coding downstream 407141 34298723 ~ 34301134 (+)
kif6 kif6 coding downstream 602243 34493825 ~ 34633946 (+)
G85588 NA non-coding upstream 38624 33852188 ~ 33852388 (+)
G85576 NA non-coding upstream 132252 33758533 ~ 33758760 (+)
G85573 NA non-coding upstream 145541 33744952 ~ 33745471 (+)
G85569 NA non-coding upstream 170052 33720723 ~ 33720960 (+)
G85566 NA non-coding upstream 173633 33711598 ~ 33717379 (+)
LOC111193250 NA non-coding downstream 34580 33926162 ~ 33929125 (+)
G85602 NA non-coding downstream 54615 33946197 ~ 33949266 (+)
LOC111193252 NA non-coding downstream 380350 34271932 ~ 34319416 (+)
G85700 NA non-coding downstream 591997 34483579 ~ 34517443 (+)
G85710 NA non-coding downstream 684265 34575847 ~ 34576218 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 1449694 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 1672250 32199183 ~ 32218762 (+)
G85189 NA other upstream 2066624 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 2085609 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 2421456 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 855232 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 1396633 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 1745228 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 3592439 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 3938173 37829755 ~ 37933289 (+)

Expression


Co-expression Network