LOC111193250


Basic Information

Item Value
gene id LOC111193250
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 33926162 ~ 33929125 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115260
TCCTCAATTTAATATAGCTTGccatttacagaaataaatctaatttacaaGTCTTATATATTCTCCCTATGTTTCCACTGCATACGGCAGCTTTTATGGATTTAAGCGCACAGGCATTTCACGAGCGCGCGCCgacaatatttatttgatcAGTTCAATGCCTCACGCTGTCTGATTTAAGCTCTACTCCTTCCTTCATTTCTGTTTGCGCGAAACATTCTGTTGCAGATAACAGGGCCctgttttacaattaaaatactaaaagtgcacttCTATTTCTGTCTTCACTTCTGGGGCAGCTATCTGCTTTCACGCTCTTCTAAACTTTATGCGCCTCTGTTTGGTTTCACCTAATAGCTACCCTATGGCGAAACAGTGGTCAGATTTCACCTGTCAAATGTCAATTAGGAAACGCTGACCATCTCCATCCTGCTACGCTGGTCGCTCTCTTTAGGAACGACGCAGCCACATCCTCAGCGAAGCTGACGTCACCATTTGCTACTTGAAGAAGACGGGTAATTTCAGCACACCTGTCACACACTTAGACCAGAACTGGACCTACTGCTGAACGCTCAGCAAGCTCATTCAACACTGTCTAAgAAGTAGAAACCAGGTAAAGATCTGCGGTgggtatatttataatttatacttttggggttggctccgccctgtcttcagtgtacgacaggatctgcagagcccagatgtatcaagccctgggccgatgacgggcctacgccaaagactctaatacATGAAATTGTTTCTATACGACTTTCACGAACATATACGTGTACTTGTTTCgcctacaaatattttgttcaaacattaaataattcaactaactaaatttgcttccggagtcgtaatagtagaaatgaaagcgcagcgtaagttctactatagactccaatgctacgtcacctaattacctatccaatcagattttctcttctgctttaaataacgatcactcattcagtaccttgctGCATTTCAGACGCTGTTGGTCGCtcttcccctcctccctccccgccgcctccaggttggtcccgtttggttgcccgggggttggctccgccctgtcttcagtgtacgacaggatctgcagagcccagatgtatcaagccctgggccgatgacgggcctacgccaaagactctaatacATGAAATTGTTTCTATACGACTTTCACGAACATATACGTGTACTTGTTTCgcctacaaatattttgttcaaacattaaataattcaactaactaaatttgcttccggagtcgtaatagtagaact
>XR_002650388.1
GTCTTATATATTCTCCCTATGTTTCCACTGCATACGGCAGCTTTTATGGATTTAAGCGCACAGGCATTTCACGAGCGCGCGCCgacaatatttatttgatcAGTTCAATGCCTCACGCTGTCTGATTTAAGCTCTACTCCTTCCTTCATTTCTGTTTGCGCGAAACATTCTGTTGCAGATAACAGGGCCctgttttacaattaaaatactaaaagtgcacttCTATTTCTGTCTTCACTTCTGGGGCAGCTATCTGCTTTCACGCTCTTCTAAACTTTATGCGCCTCTGTTTGGTTTCACCTAATAGCTACCCTATGGCGAAACAGTGGTCAGATTTCACCTGTCAAATGTCAATTAGGAAACGCTGACCATCTCCATCCTGCTACGCTGGTCGCTCTCTTTAGGAACGACGCAGCCACATCCTCAGCGAAGCTGACGTCACCATTTGCTACTTGAAGAAGACGGGTAATTTCAGCACACCTGTCACACACTTAGACCAGAACTGGACCTACTGCTGAACGCTCAGCAAGCTCATTCAACACTGTCTAAgAAGTAGAAACCAGGTAAAGATCTGCGGTgggtatatttataatttatacttttggggttggctccgccctgtcttcagtgtacgacaggatctgcagagcccagatgtatcaagccctgggccgatgacgggcctacgccaaagactctaatacATGAAATTGTTTCTATACGACTTTCACGAACATATACGTGTACTTGTTTCgcctacaaatattttgttcaaacattaaataattcaactaactaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115260 True 1293 lncRNA 0.44 3 33926162 33929125
XR_002650388.1 False 800 lncRNA 0.44 2 33926869 33928268

Neighbor

gene id symbol gene type direction distance location
slc4a1ap NA coding upstream 76653 33831270 ~ 33849509 (+)
c9h2orf71 NA coding upstream 854196 33061183 ~ 33071966 (+)
LOC103035281 NA coding upstream 868465 33042845 ~ 33057697 (+)
LOC103035585 LOC108423467 coding upstream 1003162 32729119 ~ 32923000 (+)
LOC103038371 NA coding upstream 1495897 32427026 ~ 32430265 (+)
babam2 bre,LOC107553730,LOC107656747 coding downstream 83632 34012757 ~ 34183355 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding downstream 283292 34212417 ~ 34226780 (+)
mocs1 mocs1,LOC107656745 coding downstream 313994 34243119 ~ 34264685 (+)
LOC111193251 NA coding downstream 369598 34298723 ~ 34301134 (+)
kif6 kif6 coding downstream 564700 34493825 ~ 34633946 (+)
G85596 NA non-coding upstream 34580 33891012 ~ 33891582 (+)
G85588 NA non-coding upstream 73774 33852188 ~ 33852388 (+)
G85576 NA non-coding upstream 167402 33758533 ~ 33758760 (+)
G85573 NA non-coding upstream 180691 33744952 ~ 33745471 (+)
G85569 NA non-coding upstream 205202 33720723 ~ 33720960 (+)
G85602 NA non-coding downstream 17072 33946197 ~ 33949266 (+)
LOC111193252 NA non-coding downstream 342807 34271932 ~ 34319416 (+)
G85700 NA non-coding downstream 554454 34483579 ~ 34517443 (+)
G85710 NA non-coding downstream 646722 34575847 ~ 34576218 (+)
G85709 NA non-coding downstream 707381 34636506 ~ 34637200 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 1484844 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 1707400 32199183 ~ 32218762 (+)
G85189 NA other upstream 2101774 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 2120759 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 2456606 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 817689 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 1359090 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 1707685 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 3554896 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 3900630 37829755 ~ 37933289 (+)

Expression


Co-expression Network