LOC111193252


Basic Information

Item Value
gene id LOC111193252
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 34271932 ~ 34319416 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115351
AGACCAATTCTcaagtgggtattctcctctGTAGAAGATCTCTGGCCTCTTGTTCGTGATTAGCAACCTGTTGACCTGCTGAGGTCGAATTCAAGACTAAGCCGCTGAAGTTGGAGGAAACAGTCTGCAAGATGTTcccaaaaaacagctgaaatacTCTCAGGTGTTTTGCTATTCTGAGGAAGACCCATCTAAGGTGGTGCATGCAGTAACTCTAACCAGGCGAGGGCAGTGTTGAGCTTGCATTGAGTTGAGACAGTCCTGCCGAGCCTCACTGAATGACTGCAGGAAGGTGTCAAAAATCCCAAAGAATTCATCCGGCTGCATTCGCCCCTGCTCCTCTCCAAAGTGCTTCAGCGCCTTCATAAACTAAGAAGAGAAGACGAGTGAAATTAAGCACATCAGTCAAACAATAATCACTGGAGAAGGAGTAGAAAGTAATCAGTTCTGCTGGATGAAGGTGAACATCACTGAACATCTGTGAAGCCCAAAGGCAGGATAATGAGGCTGATAAGGCAGCACTGTGTACACATACAAACAAATTGTGATGCCATTGTAGAGCTGCAGTCAGACAACTGTATCCCGCCAGCTTTCTCACCGCTGCCTTATCTGCCTGCTGATCTGTATACTGAGCAAGCTGCATCAGTTACAGCTACATCCATCAACACTGCATTCACCAACAACCACAATTCTATCTgtctctcctgtgtgtgtgattgatgaGACCATGCATGATTTGACTACCATATGTCCTCTCTTATCACTACCACCTGTCCAATGACCAAGGgccagaggagagagaaagagagcaaaataGATAGGTTTCCATTTCCCTgtagaataaaattaaaaaatgcacaatGAATGGAAAAGGCagaattttgttttctgtgaataaaGGATAAGAGTGAATGGTGAAATCTTTTACCGATAAGAGGGCGAGCAGAAAGAAAGCAGAACAAGttcaagagaaaaaaacaaacaagaaaaagcagagagcaagagacaatagaaataaggagagagagagagagagagagaaagggaataATATAGAGAATGTGAgtatgaataaagaaaaaagaaacagagtgaaaagaaaaatagtaAGAGACAGCAGAACTGAGTCAGGCTATGAATGTAGACAAGAGAGAAAAggatagatatatagacagacagacagacaaaagcaGTGTTTTGGTTCTTCTCAGTCCAAGGGAGGCTAATAGACAAATATAGATGGATAAACATATACAGatggacagaaagagaaaaaaacaatatataaagacAGAGGTAGACAGATGAACAGATATAGATGAATAGATACAAAGATCGATAGCCAAACATACAGCATTCCAGCGCTTTTAGTTGATGCTTCCAACAGGCTTATAATGCTagagataggggcatagcattgcccaaGCAAAGAAACCCCACCAGTCCATTTCATACTGGACTTCTCCTTTAAACAAATACTTATTGATAACACAGCCTAAGCTTCTGTTTGTCTGAAGATCATTaatagaatgaggtagaggagGCCAGTGCTGGGCTGGTATTGAACATGGCCGACGCTGTATCTTTAGGAAGGGTCTGGCACGCTGCAGTGTTAAATCATAAGGTTAGGCCATCCATTTAGATATGATTCCTGCTCTAAAAGTGTAAATCCATTTTAAGGTCAGACTGCTCCCACTGCCAAGAGCATCCCGAATCCGCAGCAGATTTGCTCTGAAGTGCTCTACGTAGCATTTAGCCTGGCTCCTGCTGGCTTCCCGCCCGCTGGGAGTTTGGCCAGTTCTGCCGGCTCTGAACTCTGAAGTGGCAGTGCATTAGAGCTCAGTGCCTCAGCTTTTCCCAATAAGAGACCAgagctgtgtcccaatttaatattaaacactaaTACTGTAAGATATTCACTCTGTACTAATCCGAACAGGGAAAGATCCCAGCAGGTTAGTGtgtgaaatattaaaacactgcactgcttGCACTAACAGGAGGTATTAAAGTGACGCTGCTATCAACTAAAAGcacattgcattattttttaaatagagcagTCTTGATGATCCAACAGTTTACTGAAGGAAATACAAAGCCAAATTGTGGGATGcagagggtgtttttttttttcagaactgttaATGGAAatggcattattattattattataacagttAGTGTGTAGAACAGTGATTTTATTAAGTTTGTGGGGGTTAAATTGCATATTTGCCCTTTTTTTAAACCTTAAGTAAG
>TU115354
AGACCAATTCTcaagtgggtattctcctctGTAGAAGATCTCTGGCCTCTTGTTCGTGATTAGCAACCTGTTGACCTGCTGAGGTCGAATTCAAGACTAAGCCGCTGAAGTTGGAGGAAACAGTCTGCAAGATGTTcccaaaaaacagctgaaatacTCTCAGGTGTTTTGCTATTCTGAGGAAGACCCATCTAAGGTGGTGCATGCAGTAACTCTAACCAGGCGAGGGCAGTGTTGAGCTTGCATTGAGTTGAGACAGATCAAACTTGTGCACCACGTTCGAGTCGTTCTGGCAAACAACAACAAGTGCATTCATTACTGGACCAAACGAAGGTGAAAAAGGCAAACATTCGCttggagaagagaaaaaaaaatacaaaaaaagtgatGCACATGGAGGCAGTGGAGGATAGTGGTGTGCTCTGATCTGATGCAGTTGAAGTTTAACTCTAAAGGACTACATTCTCTATATATTTATCTCCTCATCATAGTGTCAACATGTGGTCACCAGACCAAAGTCAAATGTGCATTTAAAAAGTCTGTATTGGCACTTCCTGTCTTGTCCCTTTGTGAATTTAACCACATACTGACGTAAAACCAGTTCCATCCCACTTTTTTCCTCTACGGGTAGATGATGCCTAGTTCAGGCCAAGGGGAGCTGTAGCCAGCCACCTTTTAATACAATTTAGAAGGGCTATCTTTCCTACCAAAATAAATCTGACCATactttctcttactttctctcactcgttcCACAAACTTCTCTGCCTCTATGcattatttttcctttaataattattataataatgatgatgataataagctGCGTGAGCTGCGTGTCCATACTGAGGGTGCAGGAAAAAAGCCTTTCCTACAAAACAAAAGTGCATCAAGCAACAAagctacatttattattatcttttcttTCCATTCTGTCTGGCCAGTCAATGACCATTCATAGTACATATATCAAAATAAAtctacaaaattaaaaataaatgataatactGATGATCTTCAAATACCCCGTGGTATCAGACTAAAGAAAGTGAGCTTAGACTGTTCTACTGGTATACTGTGCAACCATATATTTCTACCAGCATCTGCTAAAGCGCTTTTTTCTCACTGCTAAAAATATTTTGAGCTGAAGAATAGAATGAACCCACAGGCCCAAATATTTAGACACCTATTTTTAAAATTGGCATTGgcacagagaaagaaaatgctcATTAATCTGTGACATAATTAATCTGTCAATCCTTTTCCTTCATCGAAACATCAAATTTATAAATCCAATGCGAGAAACATTCCAAAGTGTCAATGAACGGGTTAATATGTTCCTTTTCCTATTTGGTATTCAAGGCCTATATCTTCATCTATTAAACAACATAGCGTTACTTTACAGGAAGGACACAGTCACCATTTTACATAATGTTTTCAGTTACATACTGAAGGAAAATTACCCCACATTTAGCTGCAGACCTCTAAACCCTTTTAATACCATTCTCCTGTCTCTTAGGATGTGTTCAGACTACAAGCAAATCAGATTTGTTCTTAAATCAGATCTGTTAAGATGACTGTCTCACTGCAATGTTATTTTCCTGTAATCAAATCGTATTAGCGGGTAGAGAAATCACATCACAacatatctgcatgggttgttGTGATAATTTGCTTGGAGTTTGTTGCATAGCAAGTGATACAAGAGACACAATTAAATACACTAAGCATCTAGATTGAGACACATCTGTACTAATCTGATTATAATCTCATTTCAAATCACCTCTGAATTTTGGTTGTCCAGACTATCAACCTTCAATCTGGATACAAATCTAGATATGCTGAAAATCAATCTAGATATACATTTGAACTAGAAGTCCAAACATAACCGAACGTAACCATTCGCAAATCTGACCTAAACCACATTTGGTGGCGGTCTAAAATGCAATCACAGTCAGATTTGTACAGATTCATCTTAGTCTGGACTcaaattgaatttttaaattaaaggtgTCTTTTGTGTCACAGTGTAACAAACAGCGACCTTTTCATATCCAGGGAGTGACAAGTGTAAGGGTCCAAGAAGAGCTCAAAAAGGCCTCATTACCACAGCAGCTCATGTGCATACATTTGTAATGTCTGATCACTTGCAGATAACAGTGTGGACAGTCATCTCATCCGGTCTGATTTGAGAAATCTGCTTTGTCTTTAGGCTGAACACAGCCTTTGTCCTTCACCTTTGTCCTGGCCATTATGGTCTAGCATTAGGCGTATTCAGCTTATAATTTAAGGGTCTGGAACTAGTGCCGCTATACCTGATTGATTAAGCCGATAAGCTCACATTTATTAATATgcaatacattattaaataagGTAGTGTTTGATTAGATCAGTCAGACTGAACACTGGGTATTTGGTTAGTACTTTTGGTATATGCTCattagaggaaaaaaatatataggtatatataaataatgaaagaaagtGACCACACCCAAGCCCTCACCTTTTACGTATTAAACACCAAGAAGGAAACCCGTCCCctctcaaaagaaaaaaaaaaaaactagaataatgagaaaaatatgCAGTAATTCTCTGTAATGGCACCATATGCTGTGTCTGTgtgctattttatattttgtgcaACCAATAACCACCTAAGCTCACCTCACCTTTTGGCTTATGGATAAAGTACCCTCCTCCTGGCATACTGGCACTGgcagaaaagtaaaaagtagAAAGTAGCAAAGAATCCTTGTCCAAACCTAAACCCCCAAATCCAACCCCCAACTTAATGGGCATGGGGTGGTACCACCCTAATGAAAGATTAACAACAAGGCTTTAAATAATCAATCAAATCTATTATCCCTTAAGAGATAAGAAGGAGGAATCCTTGTATTAACTGCCTTAAACCATTGGTTTACCCATCCACAGATGGGCAAGacaggacaaaaaaaagaaaggaaatggAAAAGAAACACGCATATTAATGTCTCTAACCCGTAACAATCTTGCAAAACCAGgtatcaccaaaaaaaataataataataata
>XR_002650390.1
acggcgtccatctttatacacagtctatgcttcatatgaacccattcattttgggtTACGCACCTGGGAGCGCCCCCTAGTGTCTGACACAGACCAATTCTcaagtgggtattctcctctGTAGAAGATCTCTGGCCTCTTGTTCGTGATTAGCAACCTGTTGACCTGCTGAGGTCGAATTCAAGACTAAGCCGCTGAAGTTGGAGGAAACAGTCTGCAAGATGTTcccaaaaaacagctgaaatacTCTCAGGTGTTTTGCTATTCTGAGGAAGACCCATCTAAGGTGGTGCATGCAGTAACTCTAACCAGGCGAGGGCAGTGTTGAGCTTGCATTGAGTTGAGACAGTCCTGCCGAGCCTCACTGAATGACTGCAGGAAGGTGTCAAAAATCCCAAAGAATTCATCCGGCTGCATTCGCCCCTGCTCCTCTCCAAAGTGCTTCAGCGCCTTCATAAACTAAGAAGAGAAGACGAGTGAAATTAAGCACATCAGTCAAACAATAATCACTGGAGAAGGAGTAGAAAGTAATCAGTTCTGCTGGATGAAGGTGAACATCACTGAACATCTGTGAAGCCCAAAGGCAGGATAATGAGGCTGATAAGGCAGCACTGTGTACACATACAAACAAATTGTGATGCCATTGTAGAGCTGCAGTCAGACAACTGTATCCCGCCAGCTTTCTCACCGCTGCCTTATCTGCCTGCTGATCTGTATACTGAGCAAGCTGCATCAGTTACAGCTACATCCATCAACACTGCATTCACCAACAACCACAATTCTATCTgtctctcctgtgtgtgtgattgatgaGACCATGCATGATTTGACTACCATATGTCCTCTCTTATCACTACCACCTGTCCAATGACCAAGGgccagaggagagagaaagagagcaaaataGATAGGTTTCCATTTCCCTgtagaataaaattaaaaaatgcacaatGAATGGAAAAGGCagaattttgttttctgtgaataaaGGATAAGAGTGAATGGTGAAATCTTTTACCGATAAGAGGGCGAGCAGAAAGAAAGCAGAACAAGttcaagagaaaaaaacaaacaagaaaaagcagagagcaagagacaatagaaataaggagagagagagagagagagagaaagggaataATATAGAGAATGTGAgtatgaataaagaaaaaagaaacagagtgaaaagaaaaatagtaAGAGACAGCAGAACTGAGTCAGGCTATGAATGTAGACAAGAGAGAAAAggatagatatatagacagacagacagacaaaagcaGTGTTTTGGTTCTTCTCAGTCCAAGGGAGGCTAATAGACAAATATAGATGGATAAACATATACAGatggacagaaagagaaaaaaacaatatataaagacAGAGGTAGACAG

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU115351 False 2259 lncRNA 0.41 4 34272022 34285239
TU115354 True 3056 lncRNA 0.38 4 34272022 34319416
XR_002650390.1 False 1394 lncRNA 0.42 4 34271932 34284284

Neighbor

gene id symbol gene type direction distance location
mocs1 mocs1,LOC107656745 coding upstream 7247 34243119 ~ 34264685 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding upstream 45152 34212417 ~ 34226780 (+)
babam2 bre,LOC107553730,LOC107656747 coding upstream 88577 34012757 ~ 34183355 (+)
slc4a1ap NA coding upstream 422423 33831270 ~ 33849509 (+)
c9h2orf71 NA coding upstream 1199966 33061183 ~ 33071966 (+)
kif6 kif6 coding downstream 174409 34493825 ~ 34633946 (+)
LOC103040539 LOC103040539,LOC108423401,LOC108270190 coding downstream 318423 34637839 ~ 34643223 (+)
LOC103040842 LOC103040842,LOC108423400 coding downstream 328648 34648064 ~ 34660780 (+)
kcnk5 kcnk5 coding downstream 385622 34705038 ~ 34735575 (+)
LOC103028138 gnmt,LOC107748599,LOC107566124,LOC107706413,LOC107553737 coding downstream 447646 34767062 ~ 34786115 (+)
G85591 NA non-coding upstream 318559 33854317 ~ 33953373 (+)
G85602 NA non-coding upstream 322666 33946197 ~ 33949266 (+)
LOC111193250 NA non-coding upstream 342807 33926162 ~ 33929125 (+)
G85596 NA non-coding upstream 380350 33891012 ~ 33891582 (+)
G85588 NA non-coding upstream 419544 33852188 ~ 33852388 (+)
G85700 NA non-coding downstream 164163 34483579 ~ 34517443 (+)
G85710 NA non-coding downstream 256431 34575847 ~ 34576218 (+)
G85709 NA non-coding downstream 317090 34636506 ~ 34637200 (+)
G85834 NA non-coding downstream 876500 35195916 ~ 35196276 (+)
G85835 NA non-coding downstream 892191 35211607 ~ 35218417 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 1830614 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 2053170 32199183 ~ 32218762 (+)
G85189 NA other upstream 2447544 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 2466529 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 2802376 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 427398 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 968799 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 1317394 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 3164605 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 3510339 37829755 ~ 37933289 (+)

Expression


Co-expression Network