G85709


Basic Information

Item Value
gene id G85709
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 34636506 ~ 34637200 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115409
agaaaaagtaaataacatgtaaaatgaataattccTAAAACTTCAGTGGCAAAATGCTGAATTATACCAAAGCTGCTTTAAATAAACTCCTCCCACAAAGACTGAATAGAGCAGTACTAACTATCCTCAGACCAGCACAATTATGAAGCACCTTCTGCATTTAAAACtgatattataatgtattatccAGTGAAATGTGATAGATAGACAATGTATAAATCTAAAGTTTGGGTAAATGTGATCGTTTAAGAAATATAAAGAAGAGTTGACCATTTCCTCTCACAAAATAAAACCGTGGTTTGCATTTCTCTGACTGTATTTGTTTGAAAGATAAGCAGCAGAAACAGTATTTGCATCGGAGAGCACTTGGCTGGGGATCACAGTCACAGAGTCAGTCTGCACGGGGAGGATTTCTCTACTTATTATGtaacattttgacattttgtacatttgtggCATTTACACCCTGTGCCCTTCATATCAGATATTCTACACAAAATAATATCTGTTCACAttagatactgtatattaagaTTTAGCTTCTGTGAGTGTTTGGGTATATTAAGATATAGTGACATTAGAATCTGGCCGTCATGCTCTCTGTAGAAATTTAAAAATGCAACTTACAACAACAGAACTGTGGAATTTGTGATACATCAAGTGTTTTGTACACTTACATTGTAACAGTATTTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115409 True 695 lncRNA 0.34 1 34636506 34637200

Neighbor

gene id symbol gene type direction distance location
kif6 kif6 coding upstream 2560 34493825 ~ 34633946 (+)
LOC111193251 NA coding upstream 335372 34298723 ~ 34301134 (+)
mocs1 mocs1,LOC107656745 coding upstream 371821 34243119 ~ 34264685 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding upstream 409726 34212417 ~ 34226780 (+)
babam2 bre,LOC107553730,LOC107656747 coding upstream 453151 34012757 ~ 34183355 (+)
LOC103040539 LOC103040539,LOC108423401,LOC108270190 coding downstream 639 34637839 ~ 34643223 (+)
LOC103040842 LOC103040842,LOC108423400 coding downstream 10864 34648064 ~ 34660780 (+)
kcnk5 kcnk5 coding downstream 67838 34705038 ~ 34735575 (+)
LOC103028138 gnmt,LOC107748599,LOC107566124,LOC107706413,LOC107553737 coding downstream 129862 34767062 ~ 34786115 (+)
LOC103028446 LOC108423447,LOC108269492 coding downstream 150150 34787350 ~ 34792462 (+)
G85710 NA non-coding upstream 60288 34575847 ~ 34576218 (+)
G85700 NA non-coding upstream 119063 34483579 ~ 34517443 (+)
LOC111193252 NA non-coding upstream 317090 34271932 ~ 34319416 (+)
G85602 NA non-coding upstream 687240 33946197 ~ 33949266 (+)
LOC111193250 NA non-coding upstream 707381 33926162 ~ 33929125 (+)
G85834 NA non-coding downstream 558716 35195916 ~ 35196276 (+)
G85835 NA non-coding downstream 574407 35211607 ~ 35218417 (+)
G85845 NA non-coding downstream 694034 35331234 ~ 35331537 (+)
G85842 NA non-coding downstream 705157 35342357 ~ 35349126 (+)
LOC111193253 NA non-coding downstream 713627 35350827 ~ 35364586 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 2195188 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 2417744 32199183 ~ 32218762 (+)
G85189 NA other upstream 2812118 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 2831103 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 3166950 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 109614 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 651015 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 999610 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 2846821 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 3192555 37829755 ~ 37933289 (+)

Expression


Co-expression Network