G85940


Basic Information

Item Value
gene id G85940
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35624212 ~ 35624571 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115710
CTCCTCGTGACAGACACACAGCACTTCTGCTTCTGGCTAGATAAGAGATAGTGGGGGTCTGAAGACGGTTAACCAGGTCTATCTCCCACTGACTAAGAGAGCGGCGTTTGGCTGGAGAAGagcaaagcacacacaCATTTGTGCTGCTCCTGGCAGTGCCACCTCccctctgacctgtgcccgctCTCTGTTTGGCTTTCTGACTCCTCTCCATGGTTTTCTGCACCACAGATTCGTACCGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115710 True 243 lncRNA 0.54 2 35624212 35624571

Neighbor

gene id symbol gene type direction distance location
LOC103041454 NA coding upstream 354744 35264933 ~ 35269468 (+)
LOC103028446 LOC108423447,LOC108269492 coding upstream 831750 34787350 ~ 34792462 (+)
LOC103028138 gnmt,LOC107748599,LOC107566124,LOC107706413,LOC107553737 coding upstream 838097 34767062 ~ 34786115 (+)
kcnk5 kcnk5 coding upstream 888637 34705038 ~ 34735575 (+)
LOC103040842 LOC103040842,LOC108423400 coding upstream 963432 34648064 ~ 34660780 (+)
LOC103042380 LOC108437745 coding downstream 43129 35667700 ~ 35686642 (+)
LOC103042687 kif13b,LOC107751739,LOC107583481,LOC107755780 coding downstream 171579 35796150 ~ 35873071 (+)
efcab11 efcab11,LOC107755768,LOC107680765,LOC107588272,LOC107693110 coding downstream 435279 36059850 ~ 36139729 (+)
foxn3 foxn3,LOC107751738,LOC107680774,LOC107583483,LOC107755777,LOC107693108 coding downstream 446741 36071312 ~ 36379111 (+)
ston2 ston2 coding downstream 777945 36402516 ~ 36469419 (+)
G85936 NA non-coding upstream 12276 35611012 ~ 35611936 (+)
G85932 NA non-coding upstream 18393 35604483 ~ 35605819 (+)
G85878 scaf8,LOC107680102,LOC107728963,LOC107749595 non-coding upstream 29075 35572718 ~ 35595137 (+)
G85882 NA non-coding upstream 45353 35578015 ~ 35578859 (+)
G85870 NA non-coding upstream 90437 35530258 ~ 35533775 (+)
G85978 NA non-coding downstream 101332 35725903 ~ 35726664 (+)
G85986 NA non-coding downstream 252661 35877232 ~ 35877847 (+)
G85990 NA non-coding downstream 255309 35879880 ~ 35946282 (+)
G85995 NA non-coding downstream 269977 35894548 ~ 35986680 (+)
G86000 NA non-coding downstream 341500 35966071 ~ 35966372 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other upstream 284380 35288215 ~ 35339832 (+)
G85740 zdhhc14 other upstream 823835 34746814 ~ 34800377 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 3182894 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 3405450 32199183 ~ 32218762 (+)
G85189 NA other upstream 3799824 31823586 ~ 31824388 (+)
LOC111193254 NA other downstream 12239 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 1859450 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 2205184 37829755 ~ 37933289 (+)
G86497 vrk1,LOC106602366 other downstream 3040596 38665167 ~ 38698313 (+)
LOC111193151 NA other downstream 3432408 39056979 ~ 39059386 (+)

Expression


Co-expression Network