LOC111193254


Basic Information

Item Value
gene id LOC111193254
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35636810 ~ 35658087 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU115713
TCTGTTGCTGTGTTGACAGGGTCAGGTAAAACAGGCTACAGAGAGTTCTGAGGCTATTACTGGATCACAGCATGtcggacacacacactcacacacacacctggagaTGAGTCTGACTGAGCTCTGCTTATGAACTGCTGAGAGAAAGATCAAGAGGTCAGGAGCGACacctgtaaaaatatatagagAAACGGCACTATGGCACCGATCTACGTCGCTCTGGGGGCCTGGGAGGCAGCAGAGTTACCAGGAGCCGCAGTTTTCTCACTGGTTACgctcttcatcatcaccatcacactCCTCGCTCTGTGCTCAACATGTCAGAAgcACTCCTTTGATCTAGATCACAGCGCTCCTGAAGACAGGAATTCAAACCTAGTCCGAGTTGTTCAACTGGAAACCACCAACATGTCCATGGATAACCCCGGTGCTGCTGACATCACCAGAGATGAGAAGTATCTCAGCACATTCCGTCCGGACGGGGCGGCAAAACCTGCTGCAGCGCGAGACACCGGGACCTGGAGGAGTCACACACTAGATCGTGACCCACAGAGGATGATAAATGGTACTGGGCCAGCACCTTCTTTTTGAGAGTATTTGAGAGTAGTACCAGACAAGACCTCACCATCCGTAACCAAAACCCCAACCCATCAGCATTTGAGCCTTCAATCACTGAAACAAGCCAACAATCTGAGGATCAGACTGTATCTACACACACTCCAGAGCCGCACGAGTTCCAAACAATCTCACTGGATGATCAGACTGATCAGACTGAACCTGAATCTCCACCACCATCATACACCCCCACCCAGCACCTGTATGAAACTGCAGAAGAACTGAGACGTCCAGGAGTCTCTAtggaaactaaactgaatcCATACGCTACATGTGAGTCCATCATGACAAACAGCACAAATGACACAAATGAGCCACAAGAGGGCTGGTCAAATATGCCGCCACCACCGCCGCCGCTGGCAGAGGAGCTGAATGAAGGTCCCAGTAGTCCAGTTATTGACACATATGCCAGAGTCAGCAGGAAAAACATGAATTTTAACGCACCAGTTGAGCTGACGCTTGAGGATGAGGCAGAGGAAGCAGAGCCACCTCTACCACAGAGGAGCTAAACAATAGAGACATTGTTATGAGGTGCCACAAGTCTGCTGAGATGTGTTAAATCCTAGGgctgcaatgctcattgctatattACACCCtgtaaacagtctattttcacaccttgtgcccACGAAAGCATCTAGgattaggaataaatctacactgatgggtaaatacaggtgcgccactgattgaAATGAACCCAGAGAAaaaaacccaacttttaactcaacagaataaagaataaaacagaacaaaactcaataaacagaataaagaataaaataatgttgctgtttccttaaatgagccTTTAGATGTAAATGTACCTTTATAGCGTAAacgcgcaggtcagtatcctctgctgagacacacaaaagcactgcactgttaagatactaatgcgccaaagtcagagctcacctgactcttaaagggaatgactactggcacactgattggtttattttatgttacacccaaaattaaccacacccatgattaattaagagaattagtacatgttttttaaatatttcgagctgtgcaaggcgtatttttgtGCCTTTATGATACCAAATACAcacgacacaccctaaatctaGCTTCGTGATCCGCATATGTATGGTGTTCTATTGTGctattgctaaaatagggcccctaaTCTCAAAAGCTGATTCAGCTATTCAGGTCTTTACGTAGAGATCCCAGTGGTGATACTGATTCAAATTGATTCAATTTccgatttgattcagttgaaTATTGATTCATCAAGTTTTTACAAGGTTTAGTTTGgatttaaaaatttatttttagagAAATAATGTTAGAACTATACAAGGAACACTAAATATaccattatttaaaacattacaatgtttacagaaagatttaacctattacattacattaatgattttatttttatttttttaattgttaaatgttTCCATAACACAAAAATCATGCACATACAATGTAAACATACACTTGCTATGATCCTGACACACTTCGGCACAAAGGCCCAAACTAAGGTAATTAAGACTTTGCTTTTGTCCAGCTCTTCCCTGCAATCATGGTTTTGAATGCAAAATCTAACCAGACCACTGCTTTTCAGTGCTGGATCTTTGCAAGAATAAAAAGGGGGTTAAAGATTTATGCACACATagggaaaatattttaatttaaagctcGATCTGTGGTTTATGTGATTTAATATCGTATCATGTCATGTCATAAAATACCACTCCAGGCTGGACTGCTGCTACTGCACTATGGAACTTTGGTGGAACTGCACAAGAACTCTCTCCAGAACTCCACAATTCACATGCTCCTTTCAATTAGATGCTGCTTCTGCATCCCTCAGCTTGTCAAAAagtgcatgtgtacagctgtctATGAGGGTGGCGCTCTCAgcaatcaacactgttagtgttaaattaacactgtatCTGTGTCCAAAACTGTGCCCTTTTTACTATGTAGTGCACTACCTTTGGGTTCAGATGTTTTGTACTAGTGTTCAAAAACGTGTTGCCGTATGCCCAGTGCACTACAACAGTCTCACAATGCACTGTAATGTATATAGTCTACAAATGATGTACAGTATCAAACATGGAATACCCATTTTCCATCACCTGGTTGGGTTTGAAGATTTGCTCACAGCTTTTTTCAGAAACATCGACATTCAGTAGGGGTGTATGAAAATACTGATATACTGAAGTATCTCAGTATTACATTTTGGAACACTGTATACATTCTC
>XM_022673218.1
GTATTGTACTGTGCGAGTCTGTTGCTGTGTTGACAGGGTCAGGTAAAACAGGCTACAGAGAGTTCTGAGGCTATTACTGGATCACAGCATGtcggacacacacactcacacacacacctggagaTGAGTCTGACTGAGCTCTGCTTATGAACTGCTGAGAGAAAGATCAAGAGGTCAGGAGCGACacctgtaaaaatatatagagAAACGGCACTATGGCACCGATCTACGTCGCTCTGGGGGCCTGGGAGGCAGCAGAGTTACCAGGAGCCGCAGTTTTCTCACTGGTTACgctcttcatcatcaccatcacactCCTCGCTCTGTGCTCAACATGTCAGAAgcACTCCTTTGATCTAGATCACAGCGCTCCTGAAGACAGGAATTCAAACCTAGTCCGAGTTGTTCAACTGGAAACCACCAACATGTCCATGGATAACCCCGGTGCTGCTGACATCACCAGAGATGAGAAGTATCTCAGCACATTCCGTCCGGACGGGGCGGCAAAACCTGCTGCAGCGCGAGACACCGGGACCTGGAGGAGTCACACACTAGATCGTGACCCACAGAGGATGATAAATGGTAGTACCAGACAAGACCTCACCATCCGTAACCAAAACCCCAACCCATCAGCATTTGAGCCTTCAATCACTGAAACAAGCCAACAATCTGAGGATCAGACTGTATCTACACACACTCCAGAGCCGCACGAGTTCCAAACAATCTCACTGGATGATCAGACTGATCAGACTGAACCTGAATCTCCACCACCATCATACACCCCCACCCAGCACCTGTATGAAACTGCAGAAGAACTGAGACGTCCAGGAGTCTCTAtggaaactaaactgaatcCATACGCTACATGTGAGTCCATCATGACAAACAGCACAAATGACACAAATGAGCCACAAGAGGGCTGGTCAAATATGCCGCCACCACCGCCGCCGCTGGCAGAGGAGCTGAATGAAGGTCCCAGTAGTCCAGTTATTGACACATATGCCAGAGTCAGCAGGAAAAACATGAATTTTAACGCACCAGTTGAGCTGACGCTTGAGGATGAGGCAGAGGAAGCAGAGCCACCTCTACCACAGAGGAGCTAAACAATAGAGACATTGTTATGAGGTGCCACAAGTCTGCTGAGATGTGTTAAATCCTAGGgctgcaatgctcattgctatattACACCCtgtaaacagtctattttcacaccttgtgcccACGAAAGCATCTAGgattaggaataaatctacactgatgggtaaatacaggtgcgccactgattgaAATGAACCCAGAGAAaaaaacccaacttttaactcaacagaataaagaataaaacagaacaaaactcaataaacagaataaagaataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115713 True 2875 TUCP 0.42 7 35636827 35658087
XM_022673218.1 False 1377 mRNA 0.48 7 35636810 35656610

Neighbor

gene id symbol gene type direction distance location
LOC103041454 NA coding upstream 367342 35264933 ~ 35269468 (+)
LOC103028446 LOC108423447,LOC108269492 coding upstream 844348 34787350 ~ 34792462 (+)
LOC103028138 gnmt,LOC107748599,LOC107566124,LOC107706413,LOC107553737 coding upstream 850695 34767062 ~ 34786115 (+)
kcnk5 kcnk5 coding upstream 901235 34705038 ~ 34735575 (+)
LOC103040842 LOC103040842,LOC108423400 coding upstream 976030 34648064 ~ 34660780 (+)
LOC103042380 LOC108437745 coding downstream 9613 35667700 ~ 35686642 (+)
LOC103042687 kif13b,LOC107751739,LOC107583481,LOC107755780 coding downstream 138063 35796150 ~ 35873071 (+)
efcab11 efcab11,LOC107755768,LOC107680765,LOC107588272,LOC107693110 coding downstream 401763 36059850 ~ 36139729 (+)
foxn3 foxn3,LOC107751738,LOC107680774,LOC107583483,LOC107755777,LOC107693108 coding downstream 413225 36071312 ~ 36379111 (+)
ston2 ston2 coding downstream 744429 36402516 ~ 36469419 (+)
G85940 NA non-coding upstream 12239 35624212 ~ 35624571 (+)
G85936 NA non-coding upstream 24874 35611012 ~ 35611936 (+)
G85932 NA non-coding upstream 30991 35604483 ~ 35605819 (+)
G85878 scaf8,LOC107680102,LOC107728963,LOC107749595 non-coding upstream 41673 35572718 ~ 35595137 (+)
G85882 NA non-coding upstream 57951 35578015 ~ 35578859 (+)
G85978 NA non-coding downstream 67816 35725903 ~ 35726664 (+)
G85986 NA non-coding downstream 219145 35877232 ~ 35877847 (+)
G85990 NA non-coding downstream 221793 35879880 ~ 35946282 (+)
G85995 NA non-coding downstream 236461 35894548 ~ 35986680 (+)
G86000 NA non-coding downstream 307984 35966071 ~ 35966372 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other upstream 296978 35288215 ~ 35339832 (+)
G85740 zdhhc14 other upstream 836433 34746814 ~ 34800377 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 3195492 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 3418048 32199183 ~ 32218762 (+)
G85189 NA other upstream 3812422 31823586 ~ 31824388 (+)
LOC111193255 NA other downstream 1825934 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 2171668 37829755 ~ 37933289 (+)
G86497 vrk1,LOC106602366 other downstream 3007080 38665167 ~ 38698313 (+)
LOC111193151 NA other downstream 3398892 39056979 ~ 39059386 (+)
LOC111193159 NA other downstream 3542130 39200217 ~ 39251958 (+)

Expression


Co-expression Network