G86497 (vrk1,LOC106602366)


Basic Information

Item Value
gene id G86497
gene name vrk1,LOC106602366
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 38665167 ~ 38698313 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU116491
tttattattttactgagaATGTGCCCAACATCCTGCGagagtttaagaaaaaaaaaagtacagcaaGGGAACAAATACAGACcatagaaaaatgttttaaaaaaggggggaaaagtAAGTAAGTTGGGAGTCTGAaacagaaggaggaggaggaggaggaggaggagttgtTATGTCGTCGTCGTCTTCTTGGGCCTGCCGCGGCCTCGCTTCACTCCGGGAGAGGTCTGCGTGCTCGACTCCACCAGACGCTTCTTCGGGCTGGCCTTCTTCGCGCCGTTCATTTCCTTCTTCGGGGGTGGCCGACTCTTCTTTGCAGGGGAGCCGTCGGCCTCGTCATTAGCTGCCCCCTTTTCCAGCACTTTCTTTCGCTTGGTGGCCTTGGCTGCGGATGGACCTGCACCATTGACTGACACTGAGAAGTTCAGCTTGTCGTCGTCAGTAGCGCCAATACTCTTCAGACCCTGCTGCAAAATACTCCTCAGCTTCTGGTAGTCGGGTTTATCTGTGTAACCCAGAGTCTTCACCTCCTCCATGAATTTCGCCATTTcctCTGGTTCACTTTCGGGGGTAAAGCAGCTCTTCATGAAGTCTCTGATACTGTCACGATACCTTAATTTGGAGTCTCTGACATAAACCGGGTCCTGCAGTTTATCCTCCCAGGGCAAGCGGCCGCACAGCCACTGGATCATGCAGTAGCCCAGGATCTCCAGATCCCCTCTTCTGGAAGGAGAGACGCCTTTATGCGCATCAATGCTGGTGAACTCGATGGTCCCGTCGTGGCATCTTTTCGGGTCCTCTTTGTACTCCTTCGGCACTCCATCAGGAGAATATCTGTAGGCCAGTCCATAGTCCACTAAATACACCTGATTGGGGTTCTTGTAGGACAGCAGTAGGTTGGAGGCTTTAATGTCAGCGTGCACATATTCATGATCGTGGATGTACTCTAGAATATCAAgCAGTTTAAGGCCGAGCTGAAGCACCAGTTTGCGAGGAAACCTCTTGCCACCTTCCTCAAACAGCTTCTGTAGATCTGTTCCGAATCGATCCATGACCATGAACCtgtacCTGTTCCCACTTTTCTCATGAAGTCCTGAACCCCAGTACTTTGGAACTCCTAAGTACTTCAGTTTGCGTGATTTTATCCAAGAtccaaTTAGATCGGGTTTGGCGGCTCGCATGTAAAACTTCAGCTCGGAGAACAGAGGGCCATTATCGCTCGGCTCCACTTTGATGACATATGGCGCATCGGCTCCAACAGCTCTGGAAGTATCATCACTTGCCAGATACAAGAGACCAAAGCCTCCCTGGCCGATCGGCGCTCCGAGTTTCCAGCTTTTCTTCGCTGTGTCCGTCAGGATTTCTCCAGGTGGGAATTCCTCGGCCAGTTTTCTCTTAGCTGGACCCTTTCCTTTTCCTGCTGCCCTGGCTTTGGGAGGCATttttattttcactttgcaGCAGCAGCTTCCAGTAAACTGTCTGAGTGAGGTTAGCTCTgCTCTGTGTTTTGCTTTCTACCGGCTCCAAAATTCCCGCACAACTTCTGCTGAAAGGAGGAAGCTGATT
>TU116492
tttattattttactgagaATGTGCCCAACATCCTGCGagagtttaagaaaaaaaaaagtacagcaaGGGAACAAATACAGACcatagaaaaatgttttaaaaaaggggggaaaagtAAGTAAGTTGGGAGTCTGAaacagaaggaggaggaggaggaggaggaggagttgtTATGTCGTCGTCGTCTTCTTGGGCCTGCCGCGGCCTCGCTTCACTCCGGGAGAGGTCTGCGTGCTCGACTCCACCAGACGCTTCTTCGGGCTGGCCTTCTTCGCGCCGTTCATTTCCTTCTTCGGGGGTGGCCGACTCTTCTTTGCAGGGGAGCCGTCGGCCTCGTCATTAGCTGCCCCCTTTTCCAGCACTTTCTTTCGCTTGGTGGCCTTGGCTGCGGATGGACCTGCACCATTGACTGACACTGAGAAGTTCAGCTTGTCGTCGTCAGTAGCGCCAATACTCTTCAGACCCTGCTGCAAAATACTCCTCAGCTTCTGGTAGTCGGGTTTATCTGTGTAACCCAGAGTCTTCACCTCCTCCATGAATTTCGCCATTTcctctgtttaaaatgttgtaaaacatgtaaataatgtaaaactcattatatacatgtattacacacagagtgatctattttaggcatttatttcttttactgttgttgattatggcttatagaaaagtacaatattatatatgaccaattaatacttttggcagtgtaggcagtgtgccaaatcctgctggaaaatgaaatccgcatctccataaaaccaTCACTAACTGTAGAAACTTctcactagacctcgagcagtttgggctgtgtgtctctccactcttcctccagactctgatcccttaatttactttaaa

Function

symbol description
vrk1 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in Golgi disassembly and peptidyl-serine phosphorylation. Predicted to act upstream of or within cell division and protein phosphorylation. Predicted to be located in Golgi stack. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 1A. Orthologous to human VRK1 (VRK serine/threonine kinase 1).

NR:

description
PREDICTED: serine/threonine-protein kinase VRK1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116491 True 1569 TUCP 0.50 14 38665167 38698313
TU116492 False 867 lncRNA 0.45 3 38665167 38673208

Neighbor

gene id symbol gene type direction distance location
LOC111193157 NA coding upstream 107987 38505175 ~ 38557180 (+)
LOC111193257 NA coding upstream 272777 38388013 ~ 38392390 (+)
setd3 setd3,LOC107583493,LOC107588283,LOC107668608,LOC107740583 coding upstream 886594 37719275 ~ 37778573 (+)
ccdc85c ccdc85c,ccdc85ca,LOC107740595,LOC107751728,LOC105908286,LOC107668618 coding upstream 960136 37618794 ~ 37705031 (+)
ism2 ism2,LOC108413947,LOC107583490,LOC107668626 coding upstream 1102699 37508095 ~ 37562468 (+)
LOC111193158 LOC108435428 coding downstream 32136 38730449 ~ 38766107 (+)
LOC103021548 NA coding downstream 1501324 40199637 ~ 40219694 (+)
LOC103021874 LOC108435429 coding downstream 1526300 40224613 ~ 40227222 (+)
LOC111193160 NA coding downstream 1603911 40302224 ~ 40304130 (+)
LOC103023408 NA coding downstream 1605869 40304182 ~ 40308356 (+)
G86495 NA non-coding upstream 21942 38642486 ~ 38643225 (+)
G86492 NA non-coding upstream 114977 38549610 ~ 38550190 (+)
G86478 NA non-coding upstream 234336 38430487 ~ 38430831 (+)
G86464 NA non-coding upstream 407910 38254685 ~ 38257257 (+)
G86454 NA non-coding upstream 421547 38243235 ~ 38243620 (+)
LOC111193150 NA non-coding downstream 7695 38706008 ~ 38726553 (+)
G86521 NA non-coding downstream 71620 38769933 ~ 38770411 (+)
G86527 NA non-coding downstream 98131 38796444 ~ 38818087 (+)
G86535 NA non-coding downstream 137566 38835879 ~ 38836261 (+)
G86552 NA non-coding downstream 182085 38880398 ~ 38881953 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other upstream 731878 37829755 ~ 37933289 (+)
LOC111193255 NA other upstream 1161285 37484021 ~ 37503882 (+)
LOC111193254 NA other upstream 3007080 35636810 ~ 35658087 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other upstream 3325335 35288215 ~ 35339832 (+)
G85740 zdhhc14 other upstream 3864790 34746814 ~ 34800377 (+)
LOC111193151 NA other downstream 358666 39056979 ~ 39059386 (+)
LOC111193159 NA other downstream 501904 39200217 ~ 39251958 (+)
G86752 NA other downstream 1204847 39903160 ~ 39983040 (+)
G86786 rragd,LOC108435430,LOC107755772,LOC107693082,LOC107583676,LOC105908365,LOC107751745 other downstream 1486324 40184637 ~ 40194951 (+)
LOC103022491 LOC108435435 other downstream 1586793 40285106 ~ 40299153 (+)

Expression


Co-expression Network