pnisr (pnisr,LOC102782257)


Basic Information

Item Value
gene id pnisr
gene name pnisr,LOC102782257
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31454984 ~ 31469556 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230941.3
AGCCGGTggtaataaatgataaaagctctgggacttttattctgtattggAAGTGCAGCTGCGCCGCGGGGACCCGGAGCGGTGGTAGATTCCGGGCGGCCTGTTCGCCATTTTGTGCGCAGGACTGAGAGGCTCCTGGGGATAGAAACAGCCAGACAGAATGTGGGATCAGGGTGGACAGCCCTGGCCGCAGTGGCCTCTGAGCCAGCAGCAGTGGATGCAGTCGTTTCAGCATCAGCAAGATCCAGgtcAGGTGGACTGGGCCGCTCTAGCTCAGGCATGGATTGCTCAGAAGGAGTCAAGTGGTGGGGCAGTCGAGCCGCAGCCCAACGGACAGGACATCCCCGGGCTGGACGCTCACAACAACCACTCAAACTTCCAGAATCCAGATTCCAACTTTGGGAGGATGTGGCAACCAGACTGGGCGATGCACGGGCAGCCGCCCCCGCCACCTGCAGAGCAGCCCTGGATCCCTCCTGGGCCCGGGCCGATGGATGTCGTAAATCCATCTGAGGACAGTAACAGCCAGGACAGCGTGGAGTTCACAGCAGACCCACACCACGGGGTCTTCCCTCAGAACAGCCACGGCTTCGGGGGGCAGCCGGAACACTATCCTGTTGCTACAATGGGAGTCAACCAGTTTGATTATCAGcatggagcagcagccgGAGCGGCAGCAGCAACAGGAGGAACATTCGGCCCACCAGGCGCTGGGTTCCATCCTCCATACTGGGGGCCTGACGGACCCCAAAACAGACGAGACAGACTTCCGGTTTCAGGTTTCAGGCCAGAGCGACCCAGATCACCCAACCAACTGGGAATTAAAGCACCAGAGGCTGCACCAACTCTTGATGCTGTTAAAAGGAGAACTCTGCCAGCGTGGATTCGAGAAGGCCTGGAGAAGATGGACCgagagaagcagaagaagctgGAGAAGGAGAGGCTGGAGAAGCAGCGAGCAGAAATGGCGAGCGAGGACAAGGATAATGATATGgtagaggaagagggagagggCCCTCGGGTGCCACGCAAGAGCAAATTTGACAGTGATGACGacgatgaggaggaggaggaggatggtgATGGTGAAGTTGAGGCTCAGGAGGAGAATGTGCTGGTGAGACGGCtggagaacagcagcagcagaaactcCTCTCCTGCCCGTGAGGAGCAGAGTGAACCGGAGATGactgaagaggagagagagtttCAGCTGATGCTCCTGACCAAAACACTCCTGACCGAAGTCCTCCTGGAGGTGACGAATGAAGAGATCCAGCAGGTGGCCAAAGAAACTCACCGCAAAGCCACCAAAGCTCCTGCAAAACAGCTGGCACAGTCCAGTGCACTGGCTTCTCTCACCGGCCTCGGAGGTCTGGGTGCGTACGGTTCGGACAGTGAGGAGGACGAGCGCAGTGCCAGAGGCTCAGAGTCGTCCGACACAGACGAGGAGGAGCTCCGGCATCGCATCCGCCAAAAACAGGACGCCTTCCGTCGGAAAGAGCGCGAACTGCAGCAGCAGGAGAGACAGATTCTGGAGACGCATATTAACACAGAAGCACCCAGCGGAGGCAGCAGGGAAAAGGAGACTTATGAGCCTGAACAGTTAGAGCCCAAGCACAAACTGGAAGTGAGAGATAGGGAGGCGGAGTCAGTGGCTGAGCGCCGCAGGTCGCGTAGCGAGGTGGAGGTCAGTGAGGTCAAAAGGTCAGGGTCAGGAAAGGAGGTGGGTCGCAGCGAGGAGAAAAGCGCTAACGGCTCCCCGAACGAACACCACAGCCGGTCTTCACGCTccacctcctcttcctcctccagccagtcctcttcctcctccacgTCTTCATCTTCACGTTCTTCCTCgcgctcctcttcctctccgcGGAGAAAAAGGAGGCGCAGCAGATCAGTGTCCCGCGGCAACCGCAGACACAGCCATTCAGAGCGTAGTAACCGAGAGAGGAGgcggagcagcagagacagaagctctgccCGGCACAGGAAACGCAGCCGAAGTCGCAGCCGCAGCCACTCCCGCCAGCGGCGCTCCAGCAGGGGGCGCAAGAGCAGGTCCAGGGAAAAGGCTAAGGCGGCTAGCCGCAGCTCCAGCAGGGACAGACGGCGCAGACGAAGCCGGAGTCGCAGCCGCAGCCGAAGGAGACAAAGGACGACCAGCAGGgacagggagaggaggaaagAGAGGAGCCAGAGCCAAGAGCAGGAGagcaagaagaaaaaagagaaggaggtAGACAAGAAGAAGGAAAAGCAGAAGGGAAaggagaaggagagggagaAGGATAAGGAGAGGGAAAAggttagagagaaagaaagagagagagaaagcagctCGGTCAGAGAGGAGGAAAGCAAATCTAAGAAAAGGCGAGAGAGCGAGCGCGCAGAGGAGAAAACAATACGGCaggacaacagcagcagcaggtccaGTAAAAAATCCTCGGCCAAAAGCAGCCGAAAACGTTCGGACTCCAGTTCCAGTAGATCCCCATCCCCAGAGCTTAGCAAAGCAaagaaatccaaaaaaaataaacgtagTCGATCAAGGTCAACGGAAAAATCTCACAAGTCTGGTAAGAAGGCAAGCCGCAAACACAAGTCTAAGTCACGATCAAGGTCAAACTCTCCCAGTCGGCGTAGGCGCTGAGGCGCGCTGTTCCTGACCCGTATACACTTATTTTAAAATTCCATGAGTTTAACGGGCTTGTCTCGTTATGGAGGCAACATTGTAGGTGAACTCTACTCGCCCCCTCCCCTCTTTCCACCCCTTTCTCCACCCAACGCTCCCCCTTCTTCCCAAAGCTGCACACTGTAAATATGTGATATTTTTTAAGCTATGTCTGCAATACAGGACATTTTGAATTCTAGGTTTTTGTTGCCTTGTCATTATGCAAGACTCAGCATTAGGTAGTTGACTAGGATCTTGAAGCTGTTTAACGTTTTAAAGCCCTCCCACAAATAGAGGGAAGGAAACttacatttaatgtaaattgtctgaataaaacatATGATTCTTTCTCTCCA
>XR_002650381.1
CAGAATAAGAGCCGGTggtaataaatgataaaagctctgggacttttattctgtattggAAGTGCAGCTGCGCCGCGGGGACCCGGAGCGGTGGTAGATTCCGGGCGGCCTGTTCGCCATTTTGTGCGCAGGACTGAGAGGCTCCTGGGGATAGAAACAGCCAGACAGAATGTGGGATCAGGGTGGACAGCCCTGGCCGCAGTGGCCTCTGAGCCAGCAGCAGTGGATGCAGTCGTTTCAGCATCAGCAAGATCCAGgtcAGGTGGACTGGGCCGCTCTAGCTCAGGCATGGATTGCTCAGAAGGAGTCAAGTGGTGGGGCAGTCGAGCCGCAGCCCAACGGACAGGACATCCCCGGGCTGGACGCTCACAACAACCACTCAAACTTCCAGAATCCAGATTCCAACTTTGGGAGGATGTGGCAACCAGACTGGGCGATGCACGGGCAGCCGCCCCCGCCACCTGCAGAGCAGCCCTGGATCCCTCCTGGGCCCGGGCCGATGGATGTCGTAAATCCATCTGAGGACAGTAACAGCCAGGACAGCGTGGAGTTCACAGCAGACCCACACCACGGGGTCTTCCCTCAGAACAGCCACGGCTTCGGGGGGCAGCCGGAACACTATCCTGTTGCTACAATGGGAGTCAACCAGTTTGATTATCAGcatggagcagcagccgGAGCGGCAGCAGCAACAGGAGGAACATTCGGCCCACCAGGCGCTGGGTTCCATCCTCCATACTGGGGGCCTGACGGACCCCAAAACAGACGAGACAGACTTCCGGTTTCAGGTTTCAGGCCAGAGCGACCCAGATCACCCAACCAACTGGGAATTAAAGCACCAGAGGCTGCACCAACTCTTGATGCTGTTAAAAGGAGAACTCTGCCAGCGTGGATTCGAGAAGGCCTGGAGAAGATGGACCgagagaagcagaagaagctgGAGAAGGAGAGGCTGGAGAAGCAGCGAGCAGAAATGGCGAGCGAGGACAAGGATAATGATATGgtagaggaagagggagagggCCCTCGGGTGCCACGCAAGAGCAAATTTGTAAGCATCCTGTCGAGAACACACTCAGCACTCAGGAGAAGGACCCTGAGGTTACAGCTgaccccctacacacacacacagcttccaCTATTAATAGTCTTCACTATTATCAGGGTCAGACTACTGTCAGAGCTTGAGTGAGAGTTAAGTGTAAGCGTTTGTGCTTCGAGTTTTAAAGAAATACCTTAACAACAATGAATGGAAGATAATATGCACTGCTGTTATCGACTAAACTGTCTATTGACTTCCATTCACTGTTAGCAAGATGAtcttaaactgttttttaatgcacGTCACATCTATTGTTTGGGAGCGTATTTCACAAAGCAGAATTTTACAGTTAGCCAGATAACTTAAGCCCAAACTGAAGCCAGTCCAGTAGGAGAGGAGGACAGTGATGACGacgatgaggaggaggaggaggatggtgATGGTGAAGTTGAGGCTCAGGAGGAGAATGTGCTGGTGAGACGGCtggagaac

Function

symbol description
pnisr Predicted to be active in nuclear speck and presynaptic active zone. Orthologous to human PNISR (PNN interacting serine and arginine rich protein).

NR:

description
arginine/serine-rich protein PNISR-like isoform X1

GO: NA

KEGG:

id description
K13170 PNISR, SFRS18; arginine/serine-rich protein PNISR

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230941.3 True 3039 mRNA 0.55 12 31454993 31469556
XR_002650381.1 False 1534 misc_RNA 0.54 7 31454984 31462260

Neighbor

gene id symbol gene type direction distance location
LOC103047815 galr1,LOC102797365 coding upstream 44191 31389451 ~ 31410793 (+)
znf236 znf236 coding upstream 216302 31153609 ~ 31238682 (+)
tshz1 NA coding upstream 405778 31030011 ~ 31049206 (+)
znf407 LOC104944474,LOC104948785 coding upstream 463443 30942676 ~ 30991541 (+)
LOC103044961 NA coding upstream 516556 30922969 ~ 30938428 (+)
coq3 NA coding downstream 2582 31472138 ~ 31478897 (+)
faxc faxc coding downstream 11076 31480632 ~ 31502591 (+)
fbxl4 fbxl4,LOC107587770,LOC107716847 coding downstream 55395 31524951 ~ 31540915 (+)
mms22l mms22l coding downstream 243228 31712784 ~ 31759540 (+)
rwdd1 rwdd1,LOC107700695,LOC107587776,LOC107552826,LOC107704860 coding downstream 342711 31812267 ~ 31819852 (+)
G85036 NA non-coding upstream 76933 31372531 ~ 31378051 (+)
G85025 NA non-coding upstream 98967 31269940 ~ 31356017 (+)
G85026 NA non-coding upstream 190930 31261549 ~ 31264054 (+)
G85020 NA non-coding upstream 195131 31243479 ~ 31259853 (+)
G85021 NA non-coding upstream 201392 31247348 ~ 31253592 (+)
G85052 NA non-coding downstream 37525 31507081 ~ 31508055 (+)
G85054 NA non-coding downstream 73913 31543469 ~ 31544202 (+)
G85277 NA non-coding downstream 505359 31974915 ~ 31975302 (+)
G85282 NA non-coding downstream 528777 31998333 ~ 31998653 (+)
LOC111193246 NA non-coding downstream 532298 32001854 ~ 32014439 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 839922 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 1439804 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 2376086 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 2411245 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 2413377 29040979 ~ 29041607 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 280147 31749703 ~ 31805403 (+)
G85189 NA other downstream 354030 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 729627 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 966661 32436217 ~ 32441318 (+)
G85740 zdhhc14 other downstream 3277258 34746814 ~ 34800377 (+)

Expression


Co-expression Network