mms22l (mms22l)


Basic Information

Item Value
gene id mms22l
gene name mms22l
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31712784 ~ 31759540 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230946.3
TGAACCAATCACAGAAGCGAGTCGGAGGATTCTGCAGTCGTGCGCATGCTCAGTGTAAGCGCGGGATTGTGAACAGCTGTAAGCGGAGCGTTGGCGTCAGCAGTGTGATGGAGGATGATTTCAGTCCGTCTCTCACTCCACCCATCTCCCCGTTCATGCCGGAGGATGTGTGTGAGCCGATCACACGTCCGCCCTGCTTCACCTGTGTGTACGAAGCAGGAAGAGAGGATACACACGCTCTGTCTTCTGACGGCTACGTCAGCAGAGGAGTTCTAAAGAGGTTGCTGTTGAAGTTGGACCCGTTTCCTGCGTGCTTTGAAACAGATACTGTAGATATTTTTGGCTTCTCCTGGGTGACTGAGACAGCGCTGGTGGAGTCCACTAAACTTCTGTTTGGCTTGTTCAGACAAAAAGTGTTCCGACTGGAAACTCTGGTGCAGTCCAGCTCTCATGATTTCGGTCAGGCGAGTGGTCTTCATTACGAAGCAGAAGAGCTGAGACAGCAGTGTGTGCTCTTTCTCAGCTACATCAAGGTCTTCATTCACAGGTTCCTGGATGTTTCTCAGCCTATGGATGAAGGCTTTGTTCACCCGTACTCTGAGCTGGAGGCAAAATTTCCCTCCTCTTTAGTGGAGGAGCTGTTCGGCATCACGCTGCTTATTGGTCGCCTCAAAGACCTGCCTTCTAATGTCCAGAGCGCACTGACCATCCACCACCAGGGAAAGCTTTTCCCTCCATCCTGGCATTTACTGCACCTGCACCTTGACGTTCACTGGGCTGTGCTGGAGATACTGCACCTTCTAGGACAGAAGACGATGGGTCAGGTGGTGTACGCGCACCAGTTTGTGGACTTAACTGGAGAAACTTTAACCAACATCAGCCTTTTTGAAGACCATCTGAAAAACCTGCTGTGTGACCTCATCGGCCTGGCCATGAACAAATACAACAAGGTGAGACCGACTGAGGCATTAACCAGCCATCATTTTTACTGCATCTGCACCAAAGAACTGTGGATCCTCCTCATACATCTGCTGGAACATCGGAGTAAAACACTACACTCACAGTCGTTTTGGGGCTATCTGAACGCACTGCTGCAAGCTGTACTGAAGGGGGCGCCGTCAGGTGACACAGGGCTGCCGGCACACTGTAAAGATCCCCTGGGGTTCACCTGGTGGTTCCTTACGCACATCGCCCAGCTTGGCATGCACAGCCGCAACGGATCACTGCAGAGTGAGAAACAGATGGAGGACAACTGGAGCTTTGTATTGGAGCTGCTGAAATCCAGCTGTGATTTGAAGGCTGCCTTGCAGGAGGAGCAGGTGCGCATGCATGTgcactgctgtctctctctcagtctgctgTGGGGAACCAACACTAGTGCTGTTAACACGCTATGGGAATACTACAGCAAAAACCTGAACGGATCGTTCTCTGTGCCGTGGCTGGGTGTTTCTGGTTTGGGCAGCATTAGCCCCACCCCCCTTACCCTGCTGGAACAAGCCAAAAACTGCTGCAGCCCCGACCCCGTGACCTCCGCCAGCCACCTCCAGCTCTACCGCTCTGCCAACTCCTTCCTCATCTTCCTGCGGATGCTGGCGTTACACCTGAACCAGGACAGTGCACCTGGAGCACCATGGAGGCAGATCAAGGGCAGGATCTACTCCAAGTTCCACGCCCGTCGCATGGCAGAGTTGTCTGACTCAGGCTTgcatcacttcctgttactgttCCTGGTGCTGGCGCGCTGCGGTGACCTGGAAGATGCGGCCGGCAGGGCAAGTGACCTGCTGACCCTGCTGGTGCCCGGCTCGGTGTCCCCAACCCTGTGTGCCCTGCAGTGGCGCGGGCAGCTGgcactcctgctgctgttcggTGGGCATGGCCTGGACCTGGCCCCGCTGGCATCCAAGCTCTCGTCCTCCTTCACCAACGCCGCCCGCGAGTTCTACCTGAAGACCACAGAGCCGGCCCGCCGGGCAGCGCTGTGGCAGCCTCTGTCTGCGTACCTGGAGGGCGCGGCGGAGCTGTGGCAGACCAGCACCACCCTGTGCCAGTCTGAGGAGGCTCTGCTTGGAGAAGGCTTTGGCCTGCTGCTGCCAGCCTGCCGTACCTCAGAGCTGAACACGGCACTGAGCTTCCTGTTGACTGCACTGACACAGCTAAGgagTGTGCAGCAGCGGTTTAAGCAGCTTGGTCCCTCTGACTGCCCCAGTTGGGCTCCTCCTCCCAGTGTGGTTAAAGAGCGCCACCTAGCGGTAGCCGTGGCTCTGTGGACTCATTTCTTCCCGTTTCTGCGCAGCTTGAGGCTCTCTCAGACCCCCCCGCCACAGCTGGCTGACGCAGCCACAGGTTTCACTCTGTTGGCACTGGACATGCCCAACTCCGCCCCCCAAGACCTTCAGCCACACCCACTCCAGTCTGTAATGAACAGCTTCGGCTGGGATGAAATGCTCTGCCCCCTGCTGGTGACTCGCTACCTCAGCAACCTGCTGCAGAATGGGGAGCTGGTGGGCTGGATGGGGTCTGGTTCCGGTTCCGGTTCCGCtcaggctctgtgtgtgagagcatgGATTCGCTGTGTTTTACAGCAGCATCTACACAAAACCCCTGACAACAGCAGAGCAGgtaagGTGCTGGATGAGCAGTTAGCTGAGTTAACCAGGCTGGTGCTGCGGCTTCCAGAGGTTGATTCCCTGCTGCAGAGAGCGAGTCTCCAGGCCCCCACTGCAGGAAAGCATGAGCCTAAACCTGCACTGGCACTGTTCATCAAAtcaaTAGGTCGTGTGTATTCCAGTCTGCAGCTGCTGTCCGAGCGCTCCTCTCTGGTGTGTAAAGCGCTGGAGTACTTGGGTGACGTGCTGAAGTTTATTAAACCCTACCTGCTGAACCGCAGCTCGGATGGACTCCACCTCACCTACTGGACACTTGGCTGTGTGGTGAAGCAGTGGAGCCCCCTGCTGGCCACAACCAAAGGGCAGCCACTGCTGCTGCGTATAGTTGACGTCTTGCTCCTACCTCGTTCACTGCTGCAGCAGGACAAAGCCCCGTCCACACAGGACAAGACCCCGTCCACTCAGGTGCTTTCTGCCCTAAAGGAAACGCTCCCGCTGTATCTGCAGGGTCTCTCTATAGCTGCGAGTGTGTCTCAGACGCAGGGTGTGTATCTGAGGCAGCAGCTGCGCAATGTCATAGTCCAATACCTGAGCCGCTTTCTCCCAGCCACGCCCACCGCAGGAGCTGTGGCCAATCACCCCGTGCTCTTGTCTGGTTGTGAGGCCACACCCAGCCCACGAGGGGCAGTGCTAAGGAAGACTATCATGCAGGTGCTGAGGGATAATTTCCTGCAGTTTAAAGGCCACGCCCCTCCTCCTCGATTGGCTGCAGTGCTGTCTTTCCAGCTGGAGCTGCTGAGAAGAAATAATGACTCTGATCCCGACCTCCTAACCGTAACTCTCCCACCGGTGCTGCGCTGTCTGATGCTTGTCAACGAGCCACAGGTAAAGAGGCTGAGTGCAGACTGTCTGCAGCTGATGGTGGAGAGATGTTTGTGTGCAGCTGGAGATCAGCCGTGTGAGCAGCTCATCAGTGTTTTCCGGACGTTTGTGGAGGAGAATGAAGGTGTGTATGAGCTGCAGGTGTACAGTGTGCTGGAGACCGTAGCCATCCTCAGTCCGTCCACGGTGTCCACTCTGATTCCAGATCTGTCTCGCTGTATGAGAAACACAGAGCAGAAACGAGGACTCGGCAGGAATATCTCTCtcagGAATGGCTATAAGTCTCTCTTGGCGCTTTTGGGAGAAGCAGGTCAGGCTGAGTTGGTCAGTCTGGAGGCAGATTGATTACTCTGACCTGTGTTCATCACTGCTGTCCtgaatgtaaatactgtatattatgtgTTGAAAGTCATTTCTGTGTTTTGTATCTGAATATGTGccaatttaataaattgttagaagtgtgtgttt
>XM_022673175.1
TTTGGCTTCTCCTGGGTGACTGAGACAGCGCTGGTGGAGTCCACTAAACTTCTGTTTGGCTTGTTCAGTCTGTCTGTCATTTCAGACAAAAAGTGTTCCGACTGGAAACTCTGGTGCAGTCCAGCTCTCATGATTTCGGTCAGGCGAGTGGTCTTCATTACGAAGCAGAAGAGCTGAGACAGCAGTGTGTGCTCTTTCTCAGCTACATCAAGGTCTTCATTCACAGGTTCCTGGATGTTTCTCAGCCTATGGATGAAGGCTTTGTTCACCCGTACTCTGAGCTGGAGGCAAAATTTCCCTCCTCTTTAGTGGAGGAGCTGTTCGGCATCACGCTGCTTATTGGTCGCCTCAAAGACCTGCCTTCTAATGTCCAGAGCGCACTGACCATCCACCACCAGGGAAAGCTTTTCCCTCCATCCTGGCATTTACTGCACCTGCACCTTGACGTTCACTGGGCTGTGCTGGAGATACTGCACCTTCTAGGACAGAAGACGATGGGTCAGGTGGTGTACGCGCACCAGTTTGTGGACTTAACTGGAGAAACTTTAACCAACATCAGCCTTTTTGAAGACCATCTGAAAAACCTGCTGTGTGACCTCATCGGCCTGGCCATGAACAAATACAACAAGGTGAGACCGACTGAGGCATTAACCAGCCATCATTTTTACTGCATCTGCACCAAAGAACTGTGGATCCTCCTCATACATCTGCTGGAACATCGGAGTAAAACACTACACTCACAGTCGTTTTGGGGCTATCTGAACGCACTGCTGCAAGCTGTACTGAAGGGGGCGCCGTCAGGTGACACAGGGCTGCCGGCACACTGTAAAGATCCCCTGGGGTTCACCTGGTGGTTCCTTACGCACATCGCCCAGCTTGGCATGCACAGCCGCAACGGATCACTGCAGAGTGAGAAACAGATGGAGGACAACTGGAGCTTTGTATTGGAGCTGCTGAAATCCAGCTGTGATTTGAAGGCTGCCTTGCAGGAGGAGCAGGTGCGCATGCATGTgcactgctgtctctctctcagtctgctgTGGGGAACCAACACTAGTGCTGTTAACACGCTATGGGAATACTACAGCAAAAACCTGAACGGATCGTTCTCTGTGCCGTGGCTGGGTGTTTCTGGTTTGGGCAGCATTAGCCCCACCCCCCTTACCCTGCTGGAACAAGCCAAAAACTGCTGCAGCCCCGACCCCGTGACCTCCGCCAGCCACCTCCAGCTCTACCGCTCTGCCAACTCCTTCCTCATCTTCCTGCGGATGCTGGCGTTACACCTGAACCAGGACAGTGCACCTGGAGCACCATGGAGGCAGATCAAGGGCAGGATCTACTCCAAGTTCCACGCCCGTCGCATGGCAGAGTTGTCTGACTCAGGCTTgcatcacttcctgttactgttCCTGGTGCTGGCGCGCTGCGGTGACCTGGAAGATGCGGCCGGCAGGGCAAGTGACCTGCTGACCCTGCTGGTGCCCGGCTCGGTGTCCCCAACCCTGTGTGCCCTGCAGTGGCGCGGGCAGCTGgcactcctgctgctgttcggTGGGCATGGCCTGGACCTGGCCCCGCTGGCATCCAAGCTCTCGTCCTCCTTCACCAACGCCGCCCGCGAGTTCTACCTGAAGACCACAGAGCCGGCCCGCCGGGCAGCGCTGTGGCAGCCTCTGTCTGCGTACCTGGAGGGCGCGGCGGAGCTGTGGCAGACCAGCACCACCCTGTGCCAGTCTGAGGAGGCTCTGCTTGGAGAAGGCTTTGGCCTGCTGCTGCCAGCCTGCCGTACCTCAGAGCTGAACACGGCACTGAGCTTCCTGTTGACTGCACTGACACAGCTAAGgagTGTGCAGCAGCGGTTTAAGCAGCTTGGTCCCTCTGACTGCCCCAGTTGGGCTCCTCCTCCCAGTGTGGTTAAAGAGCGCCACCTAGCGGTAGCCGTGGCTCTGTGGACTCATTTCTTCCCGTTTCTGCGCAGCTTGAGGCTCTCTCAGACCCCCCCGCCACAGCTGGCTGACGCAGCCACAGGTTTCACTCTGTTGGCACTGGACATGCCCAACTCCGCCCCCCAAGACCTTCAGCCACACCCACTCCAGTCTGTAATGAACAGCTTCGGCTGGGATGAAATGCTCTGCCCCCTGCTGGTGACTCGCTACCTCAGCAACCTGCTGCAGAATGGGGAGCTGGTGGGCTGGATGGGGTCTGGTTCCGGTTCCGGTTCCGCtcaggctctgtgtgtgagagcatgGATTCGCTGTGTTTTACAGCAGCATCTACACAAAACCCCTGACAACAGCAGAGCAGgtaagGTGCTGGATGAGCAGTTAGCTGAGTTAACCAGGCTGGTGCTGCGGCTTCCAGAGGTTGATTCCCTGCTGCAGAGAGCGAGTCTCCAGGCCCCCACTGCAGGAAAGCATGAGCCTAAACCTGCACTGGCACTGTTCATCAAAtcaaTAGGTCGTGTGTATTCCAGTCTGCAGCTGCTGTCCGAGCGCTCCTCTCTGGTGTGTAAAGCGCTGGAGTACTTGGGTGACGTGCTGAAGTTTATTAAACCCTACCTGCTGAACCGCAGCTCGGATGGACTCCACCTCACCTACTGGACACTTGGCTGTGTGGTGAAGCAGTGGAGCCCCCTGCTGGCCACAACCAAAGGGCAGCCACTGCTGCTGCGTATAGTTGACGTCTTGCTCCTACCTCGTTCACTGCTGCAGCAGGACAAAGCCCCGTCCACACAGGACAAGACCCCGTCCACTCAGGTGCTTTCTGCCCTAAAGGAAACGCTCCCGCTGTATCTGCAGGGTCTCTCTATAGCTGCGAGTGTGTCTCAGACGCAGGGTGTGTATCTGAGGCAGCAGCTGCGCAATGTCATAGTCCAATACCTGAGCCGCTTTCTCCCAGCCACGCCCACCGCAGGAGCTGTGGCCAATCACCCCGTGCTCTTGTCTGGTTGTGAGGCCACACCCAGCCCACGAGGGGCAGTGCTAAGGAAGACTATCATGCAGGTGCTGAGGGATAATTTCCTGCAGTTTAAAGGCCACGCCCCTCCTCCTCGATTGGCTGCAGTGCTGTCTTTCCAGCTGGAGCTGCTGAGAAGAAATAATGACTCTGATCCCGACCTCCTAACCGTAACTCTCCCACCGGTGCTGCGCTGTCTGATGCTTGTCAACGAGCCACAGGTAAAGAGGCTGAGTGCAGACTGTCTGCAGCTGATGGTGGAGAGATGTTTGTGTGCAGCTGGAGATCAGCCGTGTGAGCAGCTCATCAGTGTTTTCCGGACGTTTGTGGAGGAGAATGAAGGTGTGTATGAGCTGCAGGTGTACAGTGTGCTGGAGACCGTAGCCATCCTCAGTCCGTCCACGGTGTCCACTCTGATTCCAGATCTGTCTCGCTGTATGAGAAACACAGAGCAGAAACGAGGACTCGGCAGGAATATCTCTCtcagGAATGGCTATAAGTCTCTCTTGGCGCTTTTGGGAGAAGCAGGTCAGGCTGAGTTGGTCAGTCTGGAGGCAGATTGATTACTCTGACCTGTGTTCATCACTGCTGTCCtgaatgtaaatactgtatattatgtgTTGAAAGTCATTTCTGTGTTTTGTATCTGAATATGTGccaatttaataaattgttagaagtgtgtgttt

Function

symbol description
mms22l Predicted to be involved in double-strand break repair via homologous recombination and replication fork processing. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be active in nuclear replication fork. Orthologous to human MMS22L (MMS22 like, DNA repair protein).

NR:

description
protein MMS22-like isoform X1

GO:

id name namespace
GO:0031297 replication fork processing biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0043596 nuclear replication fork cellular_component
GO:0042555 MCM complex cellular_component
GO:0035101 FACT complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230946.3 True 3965 mRNA 0.55 25 31712784 31759540
XM_022673175.1 False 3644 mRNA 0.55 23 31717441 31759540

Neighbor

gene id symbol gene type direction distance location
fbxl4 fbxl4,LOC107587770,LOC107716847 coding upstream 171869 31524951 ~ 31540915 (+)
faxc faxc coding upstream 210193 31480632 ~ 31502591 (+)
coq3 NA coding upstream 233887 31472138 ~ 31478897 (+)
LOC103047815 galr1,LOC102797365 coding upstream 301991 31389451 ~ 31410793 (+)
znf236 znf236 coding upstream 474102 31153609 ~ 31238682 (+)
rwdd1 rwdd1,LOC107700695,LOC107587776,LOC107552826,LOC107704860 coding downstream 52727 31812267 ~ 31819852 (+)
kpna5 kpna5,LOC107552832,LOC107711738,LOC107716841 coding downstream 75808 31835348 ~ 31849464 (+)
LOC103038892 NA coding downstream 660592 32420132 ~ 32425312 (+)
LOC103038371 NA coding downstream 667486 32427026 ~ 32430265 (+)
LOC103035585 LOC108423467 coding downstream 969579 32729119 ~ 32923000 (+)
G85054 NA non-coding upstream 168582 31543469 ~ 31544202 (+)
G85052 NA non-coding upstream 204729 31507081 ~ 31508055 (+)
G85036 NA non-coding upstream 334733 31372531 ~ 31378051 (+)
G85025 NA non-coding upstream 356767 31269940 ~ 31356017 (+)
G85026 NA non-coding upstream 448730 31261549 ~ 31264054 (+)
G85277 NA non-coding downstream 215375 31974915 ~ 31975302 (+)
G85282 NA non-coding downstream 238793 31998333 ~ 31998653 (+)
LOC111193246 NA non-coding downstream 242314 32001854 ~ 32014439 (+)
G85279 NA non-coding downstream 282327 32041867 ~ 32046810 (+)
G85304 NA non-coding downstream 325663 32085203 ~ 32085744 (+)
pnisr pnisr,LOC102782257 other upstream 243228 31454984 ~ 31469556 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 1097722 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 1697604 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 2633886 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 2669045 29043217 ~ 29043739 (+)
G85189 NA other downstream 64046 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 439643 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 676677 32436217 ~ 32441318 (+)
G85740 zdhhc14 other downstream 2987274 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 3528675 35288215 ~ 35339832 (+)

Expression


Co-expression Network