rwdd1 (rwdd1,LOC107700695,LOC107587776,LOC107552826,LOC107704860)


Basic Information

Item Value
gene id rwdd1
gene name rwdd1,LOC107700695,LOC107587776,LOC107552826,LOC107704860
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 31812267 ~ 31819852 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007230949.3
acgcggtcAGAGTTTCAGGCATTACTAGTCGATAGTGGAGAAGATCGAGTGCAGCCTCTCTTCAGCGGACAGGCACGTTTCTGAGGGCCGGTGGGAGCGGAGCTGTTGATGGACAGCAGTGAAATAAAATGACCGACTACGGAGAGGAGCAGCGGAACGAGCTGGAGGCGATAGAGTCCATTTACCCAGACTCGTTTACAGTTCTTTCTGAAGCACCCACGAGCTTCACAATCACAGTCACTTCAGATGCTGGAGAAAATGATGAGACTGTCCAGGTAACACTAAAGTTCACATACGTGGAGAAATACCCAGATGAAGCCCCTCTTTGGGAGATCCATTCCCAAGAAAACCTTGAGGATTCGGACACAGAGGATGTGCTGACGCTGCTGAAGCAACAGGCAGAAGAAAATCTGGGCATGGTCATGATCTTCACGCTGGTGACGGCTGTGCAGGAGAAACTGAATGAAATGGTCGACCAGATAAAGAGCAGGAGAGAAGAGGAAACTCTGAGAAGAGAAAGGGAAGCTGAAGAGGCAGAGAAGCAAGCATTCCAGGGAACTGTAGTCACGATAGAGAACTTCCTAACATGGAAGGCACAGTTTGAGCAGGATATGTTAGAACTGAGGAGGAAAAAACAGAAGGAGGACGAGcagtctggaaaaaataaactaacagGAAAGCAGCTGTTTGAAACAGATCATAATCTTGACACTTCAGATATCCAGTTTCTGGAAGACGGTGGTAACAGTGTTGAAGTGGACGAGTCGCTCTTCCAGGACATTGATGATTTGGAACTTGAAGAAGATGACCCTGATTTTGACCCACTGGACATAGGCAGTGATGAGGACTAAAGTGGTTAAAAGGGTCAGCCCCAGGAATGGACACAACTGACCATTCATCCTGCCGTTTCTCCTGAACTGTTTCTGCTGCAGGCTGCTGCATATTTTACCAAaactgttaaatttgttcattTCTACCATAATGCCATTAAAATCCCATCAGTTATGATTTA

Function

symbol description
rwdd1 Predicted to be involved in cytoplasmic translation. Predicted to be part of polysome. Orthologous to human RWDD1 (RWD domain containing 1).

NR:

description
RWD domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007230949.3 True 1012 mRNA 0.47 7 31812267 31819852

Neighbor

gene id symbol gene type direction distance location
mms22l mms22l coding upstream 52727 31712784 ~ 31759540 (+)
fbxl4 fbxl4,LOC107587770,LOC107716847 coding upstream 271352 31524951 ~ 31540915 (+)
faxc faxc coding upstream 309676 31480632 ~ 31502591 (+)
coq3 NA coding upstream 333370 31472138 ~ 31478897 (+)
LOC103047815 galr1,LOC102797365 coding upstream 401474 31389451 ~ 31410793 (+)
kpna5 kpna5,LOC107552832,LOC107711738,LOC107716841 coding downstream 15496 31835348 ~ 31849464 (+)
LOC103038892 NA coding downstream 600280 32420132 ~ 32425312 (+)
LOC103038371 NA coding downstream 607174 32427026 ~ 32430265 (+)
LOC103035585 LOC108423467 coding downstream 909267 32729119 ~ 32923000 (+)
LOC103035281 NA coding downstream 1222993 33042845 ~ 33057697 (+)
G85054 NA non-coding upstream 268065 31543469 ~ 31544202 (+)
G85052 NA non-coding upstream 304212 31507081 ~ 31508055 (+)
G85036 NA non-coding upstream 434216 31372531 ~ 31378051 (+)
G85025 NA non-coding upstream 456250 31269940 ~ 31356017 (+)
G85026 NA non-coding upstream 548213 31261549 ~ 31264054 (+)
G85277 NA non-coding downstream 155063 31974915 ~ 31975302 (+)
G85282 NA non-coding downstream 178481 31998333 ~ 31998653 (+)
LOC111193246 NA non-coding downstream 182002 32001854 ~ 32014439 (+)
G85279 NA non-coding downstream 222015 32041867 ~ 32046810 (+)
G85304 NA non-coding downstream 265351 32085203 ~ 32085744 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 6864 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 342711 31454984 ~ 31469556 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 1197205 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 1797087 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 2733369 29071891 ~ 29078898 (+)
G85189 NA other downstream 3734 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 379331 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 616365 32436217 ~ 32441318 (+)
G85740 zdhhc14 other downstream 2926962 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 3468363 35288215 ~ 35339832 (+)

Expression


Co-expression Network