LOC103044961


Basic Information

Item Value
gene id LOC103044961
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30922969 ~ 30938428 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231650.3
GGGGCCGTGCTTTAGCAGTGTGGTATCGCGGAgggagggacagacagacagtgagctATGAAGCGGAGAGACTCCACTGTCCAGCCCTCGCTGTCCGCCTGACACCGTTCATACATCCACGAGCCGAGGATCACCTTACCAATATGCGGTTCCCGTCCGCTCCGAGCGCCCGCCGCGGTCTGTGAGTCCCCGCTGAGCCCGCAGCCCCGAACCCGGAGGGTTTTTCCCCCGTCGGCGCGTCGACTCGCTCCGAGCAGGCAATGACAACCGCCTCGGCGACCCCGCAGCAGATGAGAGACCGGCTGCTGCAGGCCATCGATAGCCACAGCAATATCCGTAACATGGTTGCAGTACTTGATGTTATCAGCCATTTGGAGAAATACCCCATCACCAAAGAAGCACTTGAGGAAACTCGCCTAGGAAAGCTTATTAACGATGTGAGGAAAAAGACGAAGGATGAAGACCTTGCAAAGCGTGCCAAGAAACTTCTTAGAAACTGGCAGAAGCTCATTGAGCCTAGCCAGAGCGACACTCCGTCTCGAGGAGTGCAGGGCGGCCCCGGCTCGGCCAATGGCGGCTCCCATCCCTGCCGAACAGACGTGCCCGTGCCCCCACCTGCCAAGGTCGCTCCAGAACTCAAAACTCGAAATGACATCCATAACACTTTCTCTCCTTTGGCGGAGAAATCGAGAAGTCGGAAACACAGGGACCAAAGGGATAGTCCTAATCTGCCTTCCAAAGTGTATAAAACGCAGAGCAATGTGTTTTCTTCCCCTCTGCCATCAAACGGAATCGGTGGCAACCCTGAGCCTCTTACTGAAAAACAAGACGATGCACCTTCTGACAGAAACCGGCCAGAGCCTCTGGAGACTGACAGACAAAACAAAATCCCAGTCAATGCTGTTAAGCCTCATCCGAGTTCGCCTGGGCTCACTAAACTCCCTAGCACTTCTTCCTTACTTAAAACTTCAGTGTTAAAACAACTGATCGTAGACGGAGCAGAAAAACCTCAACCCAGTAGTAGTCCCCAGTACTCACTAAGTCCACGTCTTGTAAAGCAAGAGACTGTGGCTAAGAGGTCTTCAGCGTATGCACCAAAAGCGACTCTCTTGAGCCCATCTCAGAATTCTGCCCAAGTGCCCTCTCTTCTGCCTTTAACGTCCCCAACCCAAGTGTCTTGCGCTGACGGTCCCGGCCCCGGCCCCTTACCTCTAGAGGTGGAGGACTCCTTTCCCTTGCACAGACCGGCAGAAAGAACGACGCACGAGCCGTCAGACGTGCAGAACGCGTTGCCTGAGGTTACGAAGGACAGCTCCGAGAGGGTAACGTCCAACAAGAAGCGAAAGAAGTACCGCTCTAGAGACTACACGGTAAACCTCCAAGGACAGCCCTCAGAGGACCAGACGAAACCTGTGCGATTAAAAGAGCGCAGACTGACGTTCGACCCGGTGACCGGGCAGATAAAGCCCCTAACTCCGAAGGAGTCCCTCCCAGAGGAGGAGTGCCAGGGACCACCAGCGTTTGAGCCTGCAAGGACAGAAGTTCCCACACAGAGGCCGTCTGTGACAGCCCCTAGTCCTTTTCAACAGACAAACTGGAAAGAGCTGTCCAGAAACGAAATCATCCAGTCTTACCTTAGCCTTCAGAGCAACGTTCTCACGTCGTCTGGAGCGCAGACCCACGGAGCGCACTTCTTCATGACTGAGTATTTGAAACGAGAGGAGCACGACGTGCGGGAGACGCGGAAGACGCACGTCTTGGTACCGTGCGGCTCCGGCTCCGAGCTCCCCGGTGTGAGCAGAGAGGTAACTCTCGAGGACCTTAGTAGGATACACTCTGAGCGCTGGCCCGGGGTCAATGGTTGTTTCGACACCAAGGGCGAATGGTTTGACTGGACAGAGTGTATATCTTTGGATACTCACGGTGATGAGTCCAGACTGAACATCCTGCCATACGTCTGCCTGgactgaagcagcagcagcagcagttctgATGGCTTTGCAAACAGTTCATCGGCACACCCTGCCCCGCCACCGCAAGTTCGTAGTCCGAAAAAATTCCGTActgaagttgtttttttttcttttctttttttttttttttttcttttaatgaaaGGTAATTTGAAAAGATGTCCTGTTTGTAATGTGCTGCTACCAACAATAATTTGCAAACAAGAGTTGTAAATAATGGCTCGGTGTTACTCCTCCGGGCCAGTTACTGCACAATGTCGTGTATAGGAGTGGTCAGAGTGAGCACTAAGCGGTGCACATAGAGGGGGTTGATTGAAAGcaagacgaaaaaaaaaaagcttgatgGCAGTTACAAAGAGCTTTATGTGACAAAGaataaattatactttttttatcatgtatgcatctatttatttgacttttttttctcctaccaGAAGGTTTATCCACTGCACCGTGCAACAGCAACAATCACTGAGGCTTATTTGGGTCCGAGTCACACCTTcagtcagtctttttttttttttttttttttttttgcattttttgcgAGGCATAGATACATATATCcatatgtctctctctttctctctatctctatctcactctctcgtgCTGATGATTATGGTAACCACTGACATTCCATACCTTTTTCCCCTCTTCACGCTTCTCAGTTTCAGAGTGTAGAAATCATTCTTGAATAcgatgtcaaaataaaagtcattaagggtatttaatttttttttttcagtgcattccTGCTAGGTAGCAGTGGCATTTCAtttttgcctctttttttttcttttttttttaaagcagtatgTCAACATTTTGACTCAGTATCTTGAATTAACGACTTGTTTTCACATCATGCTCTCgtaaaataaaacatggacATGGCCTCAATTTTGTTTACCTAGAtacatttttatgcttttattttttgttagttaTACAAGCTCAATTATGTTATGTCTTATTTAATTAGGGTGTTTAAAATGTGCATATTGCAAATACTTAAGTTAATTACTCTTTAGAAGGGTGAACTTGCAttgttatgttattatattagtgttaataaacattaatgtggtctattatttatcacaataatttctgggacaatttATCGGCcataaaatgtagtttttgtgaCGGGTATAAATGCCAgcatatttcaaaataaacttCAGGAAACTTAGGGAaagtaattacaattttttaaaagagtGAAATAAGAGTGATTGGAACATAATGTCAAATTGGAAAGTTGAGCTATACAAGGATATTTTCATGTGTGAAGagaaaaatcaatgtaaaaccAAACAGTCAAAATTAATCTGAATTATTGCAGAAATTTAccatttgtttgtcttttttatttccatttgtgGCTCTAAACCTGTACCAATCAACTTTAATTGACCTTAATATATGATGTTAATGTCGTTTTATCTCTCTTTGAGTCAAAACTGCTGTATTGCTGTAAAAGGAGCTTCTACCTAGCAGGAATGTACCACCACTCTCTTCTTTCTGTAATCCACATCTTCACCTTTGTACTGTACTGAGAGGACGAAGAAAGCAGGAAAATGCTGGAATTATTCTGACATTCCTTTAGAGGTTGATTGCCTTACtggataacaaaaaaaaaagttttaatttaattaagccGCCTTGTTGAGCATAAGGCAACgcaagcatttttatttatttctttcctcCCTTTTGTTCATATAACTGCCacccaaacacaccaaacacaactGGCAGGATCTCGCagtttctatgtgtgtgtgtacatgagcCTCACGTCCCTAATGTCCGCCTCCAGCTCGAGTTTGAGTGCGTGTGTTTATTTCCTGAGCTTCTGTGAAACGGGCCTTTTAAAGGAACATCATGATCATAATGAtggcgtgtttttttttcttttcgttCTGTGGAGCTTCATCTGCAGGTTGAGCCGCTCAGGATGAGGGATGAGTCACGTCACTCAGCATTTCTCCACCTCTTCACACACCATGGGTTGTGTATTGTTgtgtatttgttgtttttgcccccccacaccccccaaCAGAATGTTTGGTTTCGAGGCCTTTCTGTTTTGCTTTGTGAAGGCGGTGAAGTGGATTTGCTGCTGACTTGCGAACACTGTGCTCTGCTACCTTCGTCCTACCGATGTGccttttgatgtaaaaaaaaaaaaaagaaagaaaaaaaaaaaacttcggaaTGGGTTCCGCTGGCTTCACCTGGCAACAGAATGCAACGTCATTTCCAGAACCTGCAGGGATACGCACTGTGTTTGAAGCAATGGCCATGTAATGAGCTCAGCCCTGGTTTAAGGGGAATTGCAAAATTTGCAATAAAAACTAGAGGCCAAATTCTTTTGACCTGGTCGGTGGATCAGTActtttgttcagtgttcaacATGACtcatttgttcaaaataaatgaattcattGAAACTTT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15169 MED26; mediator of RNA polymerase II transcription subunit 26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231650.3 True 4442 mRNA 0.45 3 30922969 30938428

Neighbor

gene id symbol gene type direction distance location
rpp40 NA coding upstream 30285 30883308 ~ 30892684 (+)
LOC103037625 LOC103037625 coding upstream 176106 30713604 ~ 30746863 (+)
LOC111193145 NA coding upstream 291337 30627847 ~ 30631632 (+)
LOC103031349 ece2 coding upstream 359175 30425710 ~ 30563794 (+)
yeats2 yeats2,LOC107578903 coding upstream 595817 30257792 ~ 30327152 (+)
znf407 LOC104944474,LOC104948785 coding downstream 4248 30942676 ~ 30991541 (+)
tshz1 NA coding downstream 91583 31030011 ~ 31049206 (+)
znf236 znf236 coding downstream 215181 31153609 ~ 31238682 (+)
LOC103047815 galr1,LOC102797365 coding downstream 451023 31389451 ~ 31410793 (+)
coq3 NA coding downstream 533710 31472138 ~ 31478897 (+)
G84881 LOC103044643,LOC108428349,LOC107585172,LOC107688461,LOC107722553,LOC107680226,LOC107589802,LOC107718075 non-coding upstream 679 30912883 ~ 30922290 (+)
G84906 NA non-coding upstream 23790 30897919 ~ 30899179 (+)
G84877 NA non-coding upstream 117227 30805201 ~ 30805742 (+)
G84870 pik3cb non-coding upstream 151886 30770601 ~ 30771083 (+)
G84858 NA non-coding upstream 215786 30704476 ~ 30707183 (+)
G84997 NA non-coding downstream 111982 31050410 ~ 31050652 (+)
G84998 NA non-coding downstream 112399 31050827 ~ 31051026 (+)
G85020 NA non-coding downstream 305051 31243479 ~ 31259853 (+)
G85021 NA non-coding downstream 308920 31247348 ~ 31253592 (+)
G85026 NA non-coding downstream 323121 31261549 ~ 31264054 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 307907 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 907789 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1844071 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1879230 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1881362 29040979 ~ 29041607 (+)
pnisr pnisr,LOC102782257 other downstream 516556 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 811275 31749703 ~ 31805403 (+)
G85189 NA other downstream 885158 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1260755 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 1497789 32436217 ~ 32441318 (+)

Expression


Co-expression Network