znf407 (LOC104944474,LOC104948785)


Basic Information

Item Value
gene id znf407
gene name LOC104944474,LOC104948785
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30942676 ~ 30991541 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231651.3
TTGACGCAGGGCAGGGATGTGACGTCACAGGCGCTGTACGGCGCGCCGCTGGTGACCGGAGCAGAAAGCGCGGAGTGAGAGAAATCGCGTGGAATAAGAGGAGAGCCTGATGGAGTTTTAATTCAGGATGGATCCGTTAAAGAGGAAATTGCGGTCAGGGAAAGAGATGGCTGAGAGCAGCGAAGACGGGGACACCCTCTCTGAACCTAAAAGGGCCAAGGCTGATAACACCGGCACAGAGGATGCATCTTCGTCTAAAGAAAATGAAGGAACTCAGGACGAATCTTTGGGGAACAGAGAAAGCTGTGCTTGTtctttgtgtgattttgtggcAAAAACGCCAACTGCACTAAAAATCCACTCTAAACGGAAACACTCGGTGGGGGCTTTGAGCTCACAAACAGAAACTGTCCCTGAGAGGAATGGTGAAGAGTCAGCTGTTTctgatattaaagacattaaagagaTGGAAAACACTTCTGAAGAGAACCAGGGAGACTTGCATCAGCCTGAGCAAATAGTGACTTTACTGATCTCGCAGGAACAATCAGAAACTGCCTCCAGTTCTCATATAGAAGGCACATTGGAGCAGCCTGTGGCTCAAGCACCTCAGAAACCCTCTGAGGAGTCAGCAGGGGGCAGCACCAGCCCTACACGCATTCTGTTGGAGATGGTTGACCCTTTGTTGGGTGAAGGAAATGAAGAAACGAATCAAGGGAATGTGGTTGCTGAAGATGCAGGGAACGAGGAGAGCCAGAATGGTTCTTCCTGTAGACCTGCGGTTGAGGGTAAGCGAACCAGCAAAAGGTGTCCAAAGCCTAAAGTCCTGCATGCATGCTCCCACTGTGGGCATGTGTTTCGAGACAGGCCCAGTCTTGAGATGCACGTTAAGAGACGACACACCAAGGAAATGAACTACTTCTGTGAATGCTGTTCATACGCATGTGTGGCCAAGTGCGATTATGAGAAGCACTGCATGAGcaataagcacaaaaagaaaATGTCAGAGAACAAAGAAGCACCTCCTAATGCTGAAAGGTCTGTTTCTTCAGGGGGTTCCACTGAGCTTCAGTGCAACAGCTGCTCTTTTACAGCCAGCACCACTGACCTGCTTAGCCACCACATGAAACTGCAGCATGGCGCGGAGAGCATGGTGCACTGCAAGGTGTGCCAGTACACCTGCACACCTGAAGCAATGCAGACTCACCTGGAGGAAGAGTCCCACCTGCATGCCGCCAATGAGAAAAACATCAGTCCGCTGTACCAAGACTGTGTGGAAAATGTTCTGGTGTTACTttcagaggaaaagaaagataaagggcAAACAGAACCTGTCCCAGAGTTGCAGGAAAGCTCAGAAGAAAACTTGCGTCCTAACAGACAGAAGCGCGGAAGGCCGAAGTCGAGTCTCGTGACCACCTGCAGCCACTGCGGTCTTGTGGCGTCAAATCCCACGAACCTCAGCGTGCACATCCGCCGCAGGCACAGTCGCCTGTACAGCTTCTTCTGCAAACTCTGCAACTATTACTGCGTAACTAAAGGGGACATGGACCGCCACTGCGAGACGAAGAAACATGTTAAGCAAGCACAGGCGAGCGGGGATGGAGGGGCTGTGTTACACTTGGATGGCGAACAGGCAGCACACGCAAGTGAAGAGGATGCGGCATGGCCTGTTCAAACAGAGGGAGCCACCGGAGAGGAAAAAGAAGGCGACAAAGACGTGGAAGAAAGTCAGAGTGAGGCACCTTGCAAGAAAACCAAGTATGACCTCGTGAACTCGTGCAGCCACTGTGATTTCGTTGCCCACTCCGTGTCGTCACTCATGCTCCACATACGTCGCAAGCATATGCGGGACTTTGAGTTTGCGTGCCTGGCGTGCAGCTATTATGCCGTGACTCGCAGGGAGATTTCCCGACACATGGCAACGGAAAAGCACAAACAGAAACGTGAGGTGTACATGCAGGAGCGGTTCAAGAGCAGTTCAGCAGAGCCGGGAGGCCAGGGCATGGATGTTCAAGCACCAGCTGATCAACTGACTCTTGTTGAAGATACAGGTTCTCACGCACCAGAATGTTCTTCAGCTAATGGCTCAAGTGATTCTTCCAAAACTCCCGAAGGAACTGAAGGAGGAACTGAGGGAGGAGTGAATGATGTGACCTTGGAAAGTGTCACTGAGATCAAAGAACCAAACCAAAGTCCAGATGAAAGTTTGGAGGGGTCAAACATCCTAGAGGAACCCACAATGGAGGACATGGAGGAAAATGAAGATGAAAATGAAGATGAAGAATCCCTGGATTTGAAAGCTGTGGGTGAAAATACGCCTCTGAGATTTGCTACACTGGACGAATGCATTTTTCCCCTAAAGGCACAAACAGAGGATCAACAAGATGGGGCAGAAGGAGAGCCAAAACCGACTACTAGCACACTGAGCCTACAGGGAGGGAAAAATCTCAGACCAGTAGGGGGCACTGTGGTCAAAGGTGCTTCTGCTAACCCGCGTATCCGCTGTGAAGACTGTGGATTCCTGGCGGACGGCCTGAGTGGATTGAATGTCCACATCTCCATGAAACATCCATCTAAGGAGAAGAATTTCCACTGCCTGCTGTGCGGGAAGTCGTTCTACACGGACAGCAACTTGCAGCAACACCTGAGCAGTGCCGCTCACATGCGCAACGAGCAGGGCAGCGTTGAGGAGCTGCCTGAAGGGGGCGCCAGCTTCAAATGTGTGCGCTGTAGTGAGCCGTGTGCGACTGAACAGGAGCTTTTCCTGCACATCAAAGAGAAGCACGAGGAGCTGTTGAGAGAGGTTAATAAGTATGTTTTGGAGGACACCGAGCAAATTAACAAAGAACGACAGGAGAATCAAGGCAGCGTCTGCAAGTACTGCGGAAAGGTCTGCAAGAGCAGCAACTCCATGGCCTTCCTGGCTCATGTGCGAACACACACAGGGTCAAAGCCGTTCAGGTGtaaaatttgtaattttgcTACGGCGCAGCTCGGAGATGCACGGAACCACGTCAAGAGGCACCTGGGCATGAGGGAGTACAAATGCCACATCTGCGGgtgGGCTTTTGTGATGaagaaacacctgaacacacacctGCTGGGCAAACATGGACTGGGCCAACCCAAAGAGAGgaAGTATGAGTGTGAGCTGTGTGAGCGGAGCTTCAGTGAGAAGTGGGCTCTAAATAACCACATGAAGCTTCACACCGGAGACAAACCCTACAAGTGCACCTGGGCGTCCTGCCACTACGCTTTCCTCACCCTGTCCGCCATGAAGGATCACTACAGGACTCACACAGGTGAGAAATCGTTTCTGTGTGATCTCTGCGGTTTTGCCGGTGGGACTCGACATGCCCTCACTAAACACCGCCGCCAACACACGGGTGAACGGCCGTTCCGGTGCCACTTGTGCAATTTTGCATCAACTACCCAGTCTCACTTAACCCGGCACAAACGCGtccacaccggagagaaaccctACCGCTGCCCCTGGTGTGATTACAGGTCGAACTGTGCAGAGAACATTCGGAAGCACATCCTTCACACAGGGAAGCACGAGGGGGTGATGATGTACAACTGTCCGAAGTGTGATTACGGCACTAACGCTCCAATGGAATTCCGCAACCATTTGAAGGAAAATCACACGGACATCGAAAACCCTGATCTGGCCTACCTGCACGCAGGAATCGTGTCCAAATCCTTCGAGTGCCGTCTGAAGGGTCAGGGGGCATCATATGTGGAGACGGAAGTTGCGTTTGCTCCGGACGAAGGGCGACTGGGCTCAGAGGCGCTGCAGCAGGTCATCATCATCCAAGGCTATGGCGAAGGGGGTGCTATGgagcaggagctggaggagTCTGCGGCCGCCACGCTGCACACGCTCGCCATGACGCACACGCACGCTCAGCTACAGGTGGCGCAGGTGCTGCACATTACTGAAGACGGGCAGGTCATCCCCTGCCACAAGGTGGCGCCATCTGAGACCAATCTGCCTGAGGGAACGACGCAGTACCTGCTGGTAGAGGGGCAAGAGGAGGGCCAGAGTGGCCAGGGGCAGACCGGAGTCAGCCAGGTGCTGTCGGAGTCCTCCACTGCTTTGGACGCCCTGCTCTGTGCAGTGTCAGAAATCGGCCAGCAGGGCGGCGCTGGAGAGACGGAAATCATCACAACCGAGCAACAGGTCCAAACCCAGGTGGAGGAGCACGGGGAGGTGCAGGTGTACGGGGAGGTAGTCGAAGGTGTTGAAGgtgagggggcggggtcagtAGGCGTGGTTACGCAGGTGGTCGGCCACGCCCACCAGGACACACCTGAAGAGGTGGTACAGGAGGTGCTGCAGTTCGCTGCGAGCCAGTTGATGATGAAGGAGGGGCTGACGCAGGTCATCGTGAATGACGAGGGGACACATTACATCGTAACAGAGCTGGACGACTCCACCCTGCAGGTGGAGGGCGCTGTGTATGCACACAGTGAGGGGGCGGAGTCTGGAGAAGTGGTGGATGACCAGCAGAGCAAGGGTGCAGTAACGTATTCACACATCAGCCTTAACCAAGAAGCTCAGGAATAAAGTGGGCGGGCCTGGTGCCCTTGGTCCCTCCTCCTTTTGCTTGCTCAGTCTGTCTGACTCCgccctcttcttctcttcttgcCTTACTAGCTCAGTAGCTCAGGAGCTGAAGCAAGCTCTGATTGGAGAGCTGTAGCAAATTCATGTTGGGTCTACTGATCATTTTCTCATTGTTTctaattaaatcttattttaagGAGTAAAATTCGTAGCTTCATTACGAATCACATCTCTTCATgaactctgtgtttttcttgttttttctttttttttatctgtaaacaGTCACAACCAAAATTATTGATGGTACGTTAACCAGAGGTTCTCCATAAAATCTatgctgtattattatttaattttttttttaacacgtctgcatataaatactttataaatacagtgtcacagtgtttgttttggttctcagtgttttgttaagtgttttaattcagaaaatcctctttggtttgttttgcaTGATATGAAACGTCTCTGAGTCAAATGCAGCCAATGTTCAGTGGTGGACTCTCCAAATCACACTGACCTTCTGTTTAGTACAACTTGGCTATCAATGCTTTTCAATAAATTTGAAGCTTATTAAGTGTGTAA

Function

NR:

description
PREDICTED: zinc finger protein 407-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231651.3 True 5182 mRNA 0.51 9 30942676 30991541

Neighbor

gene id symbol gene type direction distance location
LOC103044961 NA coding upstream 4248 30922969 ~ 30938428 (+)
rpp40 NA coding upstream 49992 30883308 ~ 30892684 (+)
LOC103037625 LOC103037625 coding upstream 195813 30713604 ~ 30746863 (+)
LOC111193145 NA coding upstream 311044 30627847 ~ 30631632 (+)
LOC103031349 ece2 coding upstream 378882 30425710 ~ 30563794 (+)
tshz1 NA coding downstream 38470 31030011 ~ 31049206 (+)
znf236 znf236 coding downstream 162068 31153609 ~ 31238682 (+)
LOC103047815 galr1,LOC102797365 coding downstream 397910 31389451 ~ 31410793 (+)
coq3 NA coding downstream 480597 31472138 ~ 31478897 (+)
faxc faxc coding downstream 489091 31480632 ~ 31502591 (+)
G84881 LOC103044643,LOC108428349,LOC107585172,LOC107688461,LOC107722553,LOC107680226,LOC107589802,LOC107718075 non-coding upstream 20386 30912883 ~ 30922290 (+)
G84906 NA non-coding upstream 43497 30897919 ~ 30899179 (+)
G84877 NA non-coding upstream 136934 30805201 ~ 30805742 (+)
G84870 pik3cb non-coding upstream 171593 30770601 ~ 30771083 (+)
G84858 NA non-coding upstream 235493 30704476 ~ 30707183 (+)
G84997 NA non-coding downstream 58869 31050410 ~ 31050652 (+)
G84998 NA non-coding downstream 59286 31050827 ~ 31051026 (+)
G85020 NA non-coding downstream 251938 31243479 ~ 31259853 (+)
G85021 NA non-coding downstream 255807 31247348 ~ 31253592 (+)
G85026 NA non-coding downstream 270008 31261549 ~ 31264054 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 327614 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 927496 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1863778 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1898937 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1901069 29040979 ~ 29041607 (+)
pnisr pnisr,LOC102782257 other downstream 463443 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 758162 31749703 ~ 31805403 (+)
G85189 NA other downstream 832045 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1207642 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 1444676 32436217 ~ 32441318 (+)

Expression


Co-expression Network