LOC103029649 (klhl24,LOC107659963,LOC107721788,LOC107663692,LOC107721905)


Basic Information

Item Value
gene id LOC103029649
gene name klhl24,LOC107659963,LOC107721788,LOC107663692,LOC107721905
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30196717 ~ 30238525 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236375.3
GTATTAAAGTCGGAGCGGTTTTGACAATAACAGAAGAGTGTGCGGCAGCGCTGTAGCTGCGCGATACAAAACACGCTGTTAAAAACAGATAGAGCGACGTTTCTACACCTTTCCTCTCTGTAAAACAGAGATAGAGCTGTTCAGAGTTCAGTTTAAAGTGATGTCTGCTCTGTTTATCGACATATGGACTCTTCAACTTCACTCCAGACCCGCTTTATTGTTGTGAGAGTTCATGTGGACGCCTGACTTCTTTGTGTGAGATATTGGAAGTAATTGATCAGTAGACTGAGTGGTCCTCTCAAGACGCAATCATGGTGTTAATCCTGGGTCGGCGTCTGAACCGCGAGGAGCCGGCGGGCGTCCGTGAGTCACCCGCCATCAAGCGCAAGGTTTTCGAGATGGATCCCAAGAGCCTGAGTGATGTCTTCGACTTCTCCTCAGGCCCATCTCATGCCGAAGGCGTGCTGCAGGTGTTCAACGAGTTCCGCGAGACCCGGCTGTTCACGGACGTGGTGATCAGCGTGCAAGGCCGCGAGTTCCCCTGCCATCGTGCCGTCCTGTCCGCCTGTAGCAGCTACTTTCACGCCATGTTCTGCAACGACCACCGCGAGAGCCGCCAGATGCTGGTGGAGATCAACGGCATCCAGGCGGAGGCCATGGATGTCTTCCTGCAGTACGTCTACACCGGCCGTGCAAAGATCACCACACAGAACGTCCAGTACCTCTTTGAGACCTCCAGCCTCTTCCAGATCGCCATTCTGAGGGACGCCTGCGCCAAGTTCCTGGAGGACCAGCTGGACCCCTGCAACTGCCTCGGCATGCAACGCTTCGCTGATGCCCACTCCCTCAAACAGCTGGCCAGCCGGTGCCGAGGCTATGCCCTGCAGAACTTTCCAGAAGTCGCCCAGCATGAGGAGTTCCTGGACTTGCGAagggaggagctggaggagtaCATAGCCAGCGATGAGCTCTGCGTGGGCAGGGAGGAGGTGGTGTTTGAAGCTGTGATGAGATGGGTGTACTTTACTGTGGACTGTCGCAAGCCCCAGCTGAAGGATCTTCTCCAGCATGTGAGGCTGCCGCTCCTGCACCCTAATTACTTCGTACAGACGGTGGAGGGTGATCAGCTGATCCAGAACGCTCCAGAATGTTACCAGCTTCTGCACGAGGCCCGGCGCTACCACGTGCTCGGAAACGAGATGATGTCACCACGAACTAGACCTCGCAGGTCGACTGGTTTTTCGGAGGTGATTGTGGTGGTGGGAGGCTGTGAGAGGCTGGGGGGGTTCAATCTTCCCTACACAGAGTGTTATGATCCAGTCACGGGTGAGTGGAAGTCCCTGGCCAAGCACCCGGAGTTCACCAAGTCGGAGTACGCGGTGTGCGCCCTGCGCAACGACATCCTCGTCTCAGGTGGACGCATCAACAGCAGCTATGTGTGGATGTACAACTCTCAGCTCAACCTGTGGATCAGGGTCGCCTCGCTTAACAAGGGCCGCTGGAGACACAAGATGTTGGTGCTGCTTGGAAAGGCGTATGCTGTAGGCGGATATGACGGTCAGTCCTGCCTCAGTAACGTGGAGGTGTACGACTCCTTCTCTAACCGCTGGACGGAGGTGGCCCCTCTGAAGGAGGCTGTGAGCTCTCCAGCAGTGGCCAGCTGTGCTGGGAGGATGTTCGTCATCGGGGGAGAGCCGGACGAGAACAGCTGCACTGACAAGGTGCAGTGCTATGACCCAGAGACAGACAGCTGGTTGCTAAGAGCCAATGTTCCAATCTCCAAGCGTAACATCGCGGCCGTGTCACTCAACAAcctggtgtatgtgtgtggaggCCTGACCAAGTCCATCTACTGCTACGACCCAGCACAGGACTTCTGGATGCCAGTTGTCAACACCTTCAGCAGACAGgagtgCTGCGGGATGTCTGTGTGTAACGGAAAGATCTTCATCCTGGGCGGGCGAGGAGAGAACGGCGAAGCCTCTGATAGCATTGTGTGCTATGACCCCGCCTCCGGCATCATCACAGGCGTGGCTGCTATGCCCCGCCCCATCTCCTATCACGGCTGCATCACCATACATCGCTTCAATGAGAAACTGCATCGGACCTGAGATTGCACTTTCACACACAtgtatgcatacacacacacacacacaaatgtatcACTGGCTAGATTAAA

Function

symbol description
klhl24 Involved in intermediate filament organization and protein autoubiquitination. Located in adherens junction; cytoplasm; and desmosome. Part of Cul3-RING ubiquitin ligase complex.

NR:

description
kelch-like protein 24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236375.3 True 2179 mRNA 0.56 8 30196717 30238525

Neighbor

gene id symbol gene type direction distance location
LOC103031974 NA coding upstream 6547 30189061 ~ 30190170 (+)
LOC103030290 NA coding upstream 11905 30180920 ~ 30184812 (+)
mterf4 NA coding upstream 17691 30173586 ~ 30179026 (+)
pask LOC107557849 coding upstream 23575 30148259 ~ 30173142 (+)
LOC103038716 LOC108423492,LOC103383742,LOC108269470,LOC108270315 coding upstream 187789 29989786 ~ 30008928 (+)
yeats2 yeats2,LOC107578903 coding downstream 19267 30257792 ~ 30327152 (+)
LOC103031349 ece2 coding downstream 187185 30425710 ~ 30563794 (+)
LOC111193145 NA coding downstream 389322 30627847 ~ 30631632 (+)
LOC103037625 LOC103037625 coding downstream 475079 30713604 ~ 30746863 (+)
rpp40 NA coding downstream 644783 30883308 ~ 30892684 (+)
G84623 NA non-coding upstream 123820 30070957 ~ 30072897 (+)
G84597 NA non-coding upstream 235505 29959375 ~ 29961212 (+)
G84591 NA non-coding upstream 264327 29931960 ~ 29932390 (+)
G84558 hpcal1,hpca,LOC107565203,LOC107702105,LOC107556378 non-coding upstream 331883 29859460 ~ 29864834 (+)
G84535 NA non-coding upstream 449777 29746627 ~ 29746940 (+)
G84692 NA non-coding downstream 8931 30247456 ~ 30248237 (+)
G84693 NA non-coding downstream 10501 30249026 ~ 30249482 (+)
G84694 NA non-coding downstream 11017 30249542 ~ 30249865 (+)
G84695 NA non-coding downstream 11367 30249892 ~ 30253283 (+)
G84697 NA non-coding downstream 73481 30312006 ~ 30331109 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 181537 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1117819 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1152978 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1155110 29040979 ~ 29041607 (+)
LOC103045392 NA other upstream 1171603 28999502 ~ 29025114 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other downstream 368232 30606757 ~ 30615062 (+)
pnisr pnisr,LOC102782257 other downstream 1216459 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 1511178 31749703 ~ 31805403 (+)
G85189 NA other downstream 1585061 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1960658 32199183 ~ 32218762 (+)

Expression


Co-expression Network