degs2 (degs2,LOC107697737,LOC107733197,LOC107674056)


Basic Information

Item Value
gene id degs2
gene name degs2,LOC107697737,LOC107733197,LOC107674056
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 178406 ~ 189134 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237180.3
ACTGCTCTTTATTCACACCTGGATACAGGTATCCCTGTCTGCTCAGCCAAAACACCCACTGGCTGTTTCTGTTGCCATTACATTCAGGCACACCTTTTTACACCTTATCACGAGGGCGTGACCGAAACGAGTCCTGCGCGAGAGAGGAGCTCACCTGAGATCATTACGCCACTGCTGCATGTGGAACATGGGGAAAGCAGGTGGACGGGTAGACTTTGAATGGGTTTACGACGAGCAACCGCACACATGGAGAAGAAGAGAAATACTGGCGAAGTATCCTCAGATCAAGGCTCTGATGGGTCCGGACCCCCAGCTGAAGTGGGTTGTGTCTGGGATGGTTCTGACGCAGATCTTGGCCTGTTACCTGGTTCAGGACCTGTCCTggaagtgggtgtttttctggGCGTATGTTTTCGGAGGCTGCATTAATCACTCCCTGACCCTCGCCATTCACGACATCTCGCACAACGTGGCTTTCGGGAATAAGCAGGCCCGCTGGAACCGCTGGTTCGCCATGTTTGCCAACCTTCCCATCGGCCTGCCTTACTCCGCCTCCTTCAAGAAGTACCACATCGACCACCATCGCTATCTGGGAGGAGACGGGCTGGACGTGGACGTCCCCACGGACGTGGAGGGCTGGTTCTTCTGCACCCCGGCGAGGAAAGTCCTCTGGCTGTTTCTCCAGCCGTTCTTCTACGCGCTGCGCCCCCTGGTGGTGAACCCGAAGCCGGTGACCAGGCTGGAGATGATGAATGCCGTGGTGCAGTTCGCCGTGGACATCGTCATCTACTACCTGTGGGGACTCAAACCCATCGTGTACCTCATAGCCGGGTCTATACTGTGCATGGGCCTCCATCCCATCTCTGGACACTTCATCGCTGAGCACTACATGTACGTGAAGGGTCACGAGACCTACTCCTACTATGGCCCCCTCAACCTCATCACCTTCAACGTGGGATACCACATGGAGCACCATGACTTCCCCAGCATCCCCGGCAGCAAATTACCTGATGTGAAAAGAATCGCAGCGGAGTATTACGACACCCTGCCGCAGCACACCTCCTGGTTACGAGTGCTGTGGGACTTTGTGTTTGACGACAGCATCGGCCCGTACGCCAGGATCAAGAGAGAATACAAACTGGCCAAACAGGAATAAACTGTACTGAAGACGCATTATAACCTCTCAGAGCCGCTATTTAAACAGAACAGAGGAAAACCCGGATAAACCTGCTGAACCGGAGTGAAGACGCTGAAACCGCTCCCCCGACAACCAGAAATCACACAGACTTCAGACTTATGGTCTGTTATCTGATGTGCTTCTCAACACATGCAGGCTTAACACATGGCCACATATTAATATGGGCTGAGatgaaaatgtatatttgtatttactaAACTCTAAAAAGCCTTTTCGTCAGTGATgccttctgtttatttttacaccTGTAAAATAGTTTCTCCAAAAACCTGCTGTTTTATACCGAGTTAAAGCTGCAGTTCTGATCTGTGATCTGATTGTTCAGAGGTttcaattataatttaattcacCAGATGGTGGTGAAAATGTGCACTGCTGTTTAATAGTTCTGAAATGAatggctgaattaaaataagCGTTTCATGAGTGTGA
>XM_022672524.1
actaaaataaacgTTAGCTGGTAACGTTAGTTATATTTAGTTAACTCAGCCTTCAGTCAGTTTGAACCAACTCAACTTTCAACTGAAACCCAAAACAAGACCCAGGCACACCTTTTTACACCTTATCACGAGGGCGTGACCGAAACGAGTCCTGCGCGAGAGAGGAGCTCACCTGAGATCATTACGCCACTGCTGCATGTGGAACATGGGGAAAGCAGGTGGACGGGTAGACTTTGAATGGGTTTACGACGAGCAACCGCACACATGGAGAAGAAGAGAAATACTGGCGAAGTATCCTCAGATCAAGGCTCTGATGGGTCCGGACCCCCAGCTGAAGTGGGTTGTGTCTGGGATGGTTCTGACGCAGATCTTGGCCTGTTACCTGGTTCAGGACCTGTCCTggaagtgggtgtttttctggGCGTATGTTTTCGGAGGCTGCATTAATCACTCCCTGACCCTCGCCATTCACGACATCTCGCACAACGTGGCTTTCGGGAATAAGCAGGCCCGCTGGAACCGCTGGTTCGCCATGTTTGCCAACCTTCCCATCGGCCTGCCTTACTCCGCCTCCTTCAAGAAGTACCACATCGACCACCATCGCTATCTGGGAGGAGACGGGCTGGACGTGGACGTCCCCACGGACGTGGAGGGCTGGTTCTTCTGCACCCCGGCGAGGAAAGTCCTCTGGCTGTTTCTCCAGCCGTTCTTCTACGCGCTGCGCCCCCTGGTGGTGAACCCGAAGCCGGTGACCAGGCTGGAGATGATGAATGCCGTGGTGCAGTTCGCCGTGGACATCGTCATCTACTACCTGTGGGGACTCAAACCCATCGTGTACCTCATAGCCGGGTCTATACTGTGCATGGGCCTCCATCCCATCTCTGGACACTTCATCGCTGAGCACTACATGTACGTGAAGGGTCACGAGACCTACTCCTACTATGGCCCCCTCAACCTCATCACCTTCAACGTGGGATACCACATGGAGCACCATGACTTCCCCAGCATCCCCGGCAGCAAATTACCTGATGTGAAAAGAATCGCAGCGGAGTATTACGACACCCTGCCGCAGCACACCTCCTGGTTACGAGTGCTGTGGGACTTTGTGTTTGACGACAGCATCGGCCCGTACGCCAGGATCAAGAGAGAATACAAACTGGCCAAACAGGAATAAACTGTACTGAAGACGCATTATAACCTCTCAGAGCCGCTATTTAAACAGAACAGAGGAAAACCCGGATAAACCTGCTGAACCGGAGTGAAGACGCTGAAACCGCTCCCCCGACAACCAGAAATCACACAGACTTCAGACTTATGGTCTGTTATCTGATGTGCTTCTCAACACATGCAGGCTTAACACATGGCCACATATTAATATGGGCTGAGatgaaaatgtatatttgtatttactaAACTCTAAAAAGCCTTTTCGTCAGTGATgccttctgtttatttttacaccTGTAAAATAGTTTCTCCAAAAACCTGCTGTTTTATACCGAGTTAAAGCTGCAGTTCTGATCTGTGATCTGATTGTTCAGAGGTttcaattataatttaattcacCAGATGGTGGTGAAAATGTGCACTGCTGTTTAATAGTTCTGAAATGAatggctgaattaaaataagCGTTTCATGAGTGTGA

Function

symbol description
degs2 Predicted to enable sphingolipid delta-4 desaturase activity and sphingosine hydroxylase activity. Predicted to be involved in ceramide biosynthetic process and sphinganine metabolic process. Predicted to act upstream of or within sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human DEGS2 (delta 4-desaturase, sphingolipid 2).

NR:

description
PREDICTED: sphingolipid delta(4)-desaturase/C4-hydroxylase DES2

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function

KEGG:

id description
K04712 DEGS; sphingolipid 4-desaturase/C4-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237180.3 False 1630 mRNA 0.50 3 181291 189134
XM_022672524.1 True 1648 mRNA 0.50 4 178406 189134

Neighbor

gene id symbol gene type direction distance location
tpp1 tpp1 coding upstream 4537 163028 ~ 173869 (+)
apob NA coding upstream 102521 52801 ~ 75885 (+)
disp2 disp2 coding downstream 132173 321307 ~ 337947 (+)
ccdc32 cunh15orf57,LOC103043985 coding downstream 163019 352153 ~ 354980 (+)
LOC103044274 LOC108425589,LOC108269650,LOC107697665,LOC107719518,LOC107563387 coding downstream 170002 359136 ~ 369003 (+)
itpka itpka coding downstream 281379 470513 ~ 495668 (+)
LOC103041189 si:dkey-13p1.4,LOC103041189,LOC108436737,LOC107697687,LOC107674053,LOC107733120,LOC107719509,LOC108269552 coding downstream 457765 646899 ~ 651689 (+)
G76984 NA non-coding upstream 8903 169213 ~ 169503 (+)
G76972 NA non-coding upstream 53614 123786 ~ 124792 (+)
G76970 NA non-coding upstream 59636 113419 ~ 118770 (+)
G76969 NA non-coding upstream 60954 113328 ~ 117452 (+)
G76971 NA non-coding upstream 61807 115801 ~ 116599 (+)
G76992 NA non-coding downstream 8737 197871 ~ 203592 (+)
G76995 NA non-coding downstream 33397 222531 ~ 232122 (+)
G76976 NA non-coding downstream 49131 238265 ~ 358113 (+)
G77008 NA non-coding downstream 62876 252010 ~ 252531 (+)
G77033 NA non-coding downstream 193911 383045 ~ 383284 (+)
ldah ldah other upstream 45103 84719 ~ 133303 (+)
G77059 NA other downstream 330499 519633 ~ 520590 (+)
G77154 NA other downstream 442580 631714 ~ 632372 (+)
LOC103037215 fam196ab,LOC108436749,LOC108269663,LOC107561539,LOC107733200,LOC107674119 other downstream 694163 883297 ~ 935678 (+)
G77212 NA other downstream 815995 1005129 ~ 1008842 (+)
G77410 NA other downstream 1295536 1484670 ~ 1485050 (+)

Expression


Co-expression Network