ccdc32 (cunh15orf57,LOC103043985)


Basic Information

Item Value
gene id ccdc32
gene name cunh15orf57,LOC103043985
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 352153 ~ 354980 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237198.3
TACACACAGTCTCGGAGTGGCGGTGTGAAGCTAAGCTAGCTTTATCTGTGTTTACATACAGAAAAACGGGTCTGgaacagaaaatatacaatatgagctgttaatgtgtttaatatctGTTTACTGAGCGTCTGATTACTCGTTTTATTAAAGCACAGTTATGATCGAGGACTCTGAATCTGAGTTGGAGACCCGGTCCAGTGGGGAGCTCTGGTCCGAGATCTGCTCTAATCTGCCGGAACCGGAGGAGCAAGGACCCGGTGACGGACGGTTCACTGATTCATTCCAGCCTCCCACCCAGGAGACCAACCAGACCAACTTCACCTCCTCCCCCAGCAGCACCTTCAGCCCCTGGGAACCAATGGCAGATTCTGAAGTTTACATCGCAAGTTTAGAAAACCGTTTGAAAAGAATTAAAGGACAGTCGAATGAAGTAACTTCAAGGGAAATGCTGCGATCCTTGTCTCAGGCCAAGAAGGAGTGTTGGGACAGGTTTCTTCATGATGCTCAGGCTTCAGAACTTTTCCAAGAAGGAGATCTGGATCAGAGtgcTCTGGAGCAGCTGAAGCGCTGGCTCTCTCCTGAACGCGTAGCGATCAGTGCTGAAGAGCTGGAGTACCTCCTCCTGCCGTCACACAGCCGAGAGGAAGCTCAGCACTCCTCCAGCACAGATCACACTGCTGAAGAGCCTGATGAGGAGGAGAACTCCAGCCCAGAGAAATAAACTCCATCATTCACCTCCAATAGACTCTGATGACCAGCGGGCAGTTCAGCTGCAGTCTGAGACTGAGTGTGTCCTCAGTGCTGTACTGCACACGGTGTACAGGTGACCGATTTACCTGCATGAAGGATGACAGACACTAAATTAAAATTCCCATTGGAATGCA

Function

NR:

description
uncharacterized protein C15orf57 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237198.3 True 887 mRNA 0.49 4 352153 354980

Neighbor

gene id symbol gene type direction distance location
disp2 disp2 coding upstream 14206 321307 ~ 337947 (+)
degs2 degs2,LOC107697737,LOC107733197,LOC107674056 coding upstream 163019 178406 ~ 189134 (+)
tpp1 tpp1 coding upstream 178284 163028 ~ 173869 (+)
apob NA coding upstream 276268 52801 ~ 75885 (+)
LOC103044274 LOC108425589,LOC108269650,LOC107697665,LOC107719518,LOC107563387 coding downstream 4156 359136 ~ 369003 (+)
itpka itpka coding downstream 115533 470513 ~ 495668 (+)
LOC103041189 si:dkey-13p1.4,LOC103041189,LOC108436737,LOC107697687,LOC107674053,LOC107733120,LOC107719509,LOC108269552 coding downstream 291919 646899 ~ 651689 (+)
adprhl2 adprhl2,LOC107697751,LOC107674064,LOC107594801,LOC107719508 coding downstream 306559 661539 ~ 666304 (+)
cinp NA coding downstream 312225 667205 ~ 671575 (+)
G77008 NA non-coding upstream 99622 252010 ~ 252531 (+)
G76995 NA non-coding upstream 120031 222531 ~ 232122 (+)
G76992 NA non-coding upstream 148561 197871 ~ 203592 (+)
G76984 NA non-coding upstream 182650 169213 ~ 169503 (+)
G76972 NA non-coding upstream 227361 123786 ~ 124792 (+)
G77033 NA non-coding downstream 28065 383045 ~ 383284 (+)
G77035 NA non-coding downstream 53003 407983 ~ 501997 (+)
G77041 NA non-coding downstream 68096 423076 ~ 482930 (+)
G77049 NA non-coding downstream 102923 457903 ~ 467900 (+)
G77048 ivd,LOC107719458,LOC107733087 non-coding downstream 104288 459268 ~ 465132 (+)
ldah ldah other upstream 218850 84719 ~ 133303 (+)
G77059 NA other downstream 164653 519633 ~ 520590 (+)
G77154 NA other downstream 276734 631714 ~ 632372 (+)
LOC103037215 fam196ab,LOC108436749,LOC108269663,LOC107561539,LOC107733200,LOC107674119 other downstream 528317 883297 ~ 935678 (+)
G77212 NA other downstream 650149 1005129 ~ 1008842 (+)
G77410 NA other downstream 1129690 1484670 ~ 1485050 (+)

Expression


Co-expression Network